1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcacatgtttcttgatcatgatcattctctgtagtgatcggcagtgacaacgttgctcttctcttggttaatttggttgtttgatcctttcctgtttcagCTTGACGAGATCGACGTAGAGGCAGCTCCCCCACAGCCTCCATGGAACGGAAACTGCAGCAATGGCCATGGCGGCGGCGGCGGCGTGTTTTCCAGTGAGC
species | Oryza sativa |
transcript | LOC_Os03g54170.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAACAAATGCTACAAGATGCAAACAGGGTCCTGAAAAGGAAG CTTGACGAGATCGACGTAGAGGCAGCTCCCCCACAGCCTCEST: gi|86504524|gb|CI147157.1|CI147157
genomic: GAACAAATGCTACAAGATGCAAACAGGGTCCTGAAAAGGAAGgtacgagatt ... cctgtttcagCTTGACGAGATCGACGTAGAGGCAGCTCCCCCACAGCCTC
EST: CCTGAAAAGGAAG CTTGACGAGATCGACGTAGAGGCAGCTCCCCCACAGCCTCCATGGAACGGA
genomic: CCTGAAAAGGAAGgtacgagatt ... cctgtttcagCTTGACGAGATCGACGTAGAGGCAGCTCCCCCACAGCCTCCATGGAACGGA
gacaacgttgctcttctcttggttaatttggttgtttgatcctttcctgtttcagCTTGACGAGATCGACGTAGAGGCAGCTCCCCCACAGCCTCCATGGAACGGAAACTGCAGCAATGGCCATGGCGGCGGCGGCGGCGTGTTTTCCAGTGAGC
tcctttcctgtttc CT-rich tract
ttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacatgtttcttgatcatgatcattctctgtagtgatcggcagtgacaacgttgctcttctcttggttaatttggttgtttgatcctttcctgtttcagCTTGACGAGATCGACGTAGAGGCAGCTCCCCCACAGCCTCCATGGAACGGAAACTGCAGCAATGGCCATGGCGGCGGCGGCGGCGTGTTTTCCAGTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- acatgtt
- - - - - - - -tcatgat
- - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga