1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtgtgttcatgttattcatgttttcagttcataatatgcacttgtctgattcaaaatcatatccttggaatgttattttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTCCAAGTTCTTGGTCTCGGTACTGCATTGAAGATTCTTTTCTCTGTTGAT
species | Oryza sativa |
transcript | LOC_Os03g52340.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|58606099|gb|CK034132.1|CK034132
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCGATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|86500373|gb|CI143006.1|CI143006
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|29657857|gb|CB654132.1|CB654132
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
cataatatgcacttgtctgattcaaaatcatatccttggaatgttattttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTCCAAGTTCTTGGTCTCGGTACTGCATTGAAGATTCTTTTCTCTGTTGAT
gtctgat putative branch site (score: 4)
ttattttc putative PPT
attcaaaatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgttcatgttattcatgttttcagttcataatatgcacttgtctgattcaaaatcatatccttggaatgttattttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTCCAAGTTCTTGGTCTCGGTACTGCATTGAAGATTCTTTTCTCTGTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA