1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtttatttcatttctcatttatttaaagattcaaccatcctgctttgtattaatatcttgatgtttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATGGCACCCAATTTTGGCAAGCTAAACAAATCATTAGCTGAACTG
species | Oryza sativa |
transcript | LOC_Os03g50620.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|157650986|gb|EX450620.1|EX450620
genomic: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGAgtatgtttat ... atgtttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|27578010|gb|CB000705.1|CB000705
genomic: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGAgtatgtttat ... atgtttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|29689065|gb|CB685340.1|CB685340
genomic: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGAgtatgtttat ... atgtttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
genomic: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGAgtatgtttat ... atgtttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
catttatttaaagattcaaccatcctgctttgtattaatatcttgatgtttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATGGCACCCAATTTTGGCAAGCTAAACAAATCATTAGCTGAACTG
tgtttct CT-rich tract
tttgtattaatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttatttcatttctcatttatttaaagattcaaccatcctgctttgtattaatatcttgatgtttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATGGCACCCAATTTTGGCAAGCTAAACAAATCATTAGCTGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA