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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgctgacaaagaggggaaggatgcactggacaagctttgcttttgcaaggttttgcgattttagtctcaagttttgctcctgtccgaatcattttgaataccacgctataatttgatttcgtatcgttgttaaattctcatctctattttttgtagGTTGCAACGATTTTTTATTCCTATAGAGAACAG

Basic information

species Oryza sativa
transcript LOC_Os03g48160.1
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgctataatttgatttcgtatcgttgttaaattctcatctctattttttgtagGTTGCAACGATTTTTTATTCCTATAGAGAACAG
         atttgat  putative branch site (score: 5)
                                 ttctcatctctatttt  putative PPT
     tataatttgattt  TA-rich tract