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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacaattaccttccataagtctattgagagtagtcaatctacttgtatttactaatctcggtttcctctgtcctttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAA

Basic information

species Oryza sativa
transcript LOC_Os03g46740.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672683|gb|CK061369.1|CK061369
EST:     GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
genomic: GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaagaacaa ... ttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
EST: gi|58691671|gb|CK080358.1|CK080358
EST:     GCAGC-TTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
genomic: GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaagaacaa ... ttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
EST: gi|29620621|gb|CB625632.1|CB625632
EST:     GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
genomic: GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaagaacaa ... ttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
EST: gi|226698432|gb|GO497010.1|GO497010
EST:     GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
genomic: GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaagaacaa ... ttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
EST: gi|58593744|gb|CF992052.1|CF992052
EST:     CAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTG                         AGATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
genomic: CAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaagaacaa ... ttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
EST: gi|218486282|gb|FG952873.1|FG952873
EST:     GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
genomic: GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaagaacaa ... ttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA
EST: gi|27547660|gb|CA767399.2|CA767399
EST:     GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT                         ATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACGCTAGTGACAGA
genomic: GCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTTgtaagaacaa ... ttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtcaatctacttgtatttactaatctcggtttcctctgtcctttggctttagATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAA
                    tactaat  putative branch site (score: 1)
                          tctcggtttcctctgt  CT-rich tract
             ttgtatttactaat  TA-rich tract