1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctgtagtgggtatctgcagaatgtgataatgctccactgttctttcatgcccaccgctatgttcttatgctatccaatctctcttttttaacctttcagGTGGCAACAGCTTTTAATAAACAGCATTGTTGGCTATGACACTATACTTACAAACAGCTTAGTGAACTCCCCTGGTCATG
species | Oryza sativa |
transcript | LOC_Os03g45770.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGGACTATAAATATCACAATTTCTGCTCGAAATCCTTGCTTTGGAAATAG GTGGCAACAGCTTTTAATAAACAGCATTGTTGGCTATGACACTATACTTAC
genomic: CGGACTATAAATATCACAATTTCTGCTCGAAATCCTTGCTTTGGAAATAGgtcattatcg ... aacctttcagGTGGCAACAGCTTTTAATAAACAGCATTGTTGGCTATGACACTATACTTAC
tcatgcccaccgctatgttcttatgctatccaatctctcttttttaacctttcagGTGGCAACAGCTTTTAATAAACAGCATTGTTGGCTATGACACTATACTTACAAACAGCTTAGTGAACTCCCCTGGTCATG
ttttaac putative branch site (score: 2)
tctctcttttttaacc CT-rich tract
tcttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtagtgggtatctgcagaatgtgataatgctccactgttctttcatgcccaccgctatgttcttatgctatccaatctctcttttttaacctttcagGTGGCAACAGCTTTTAATAAACAGCATTGTTGGCTATGACACTATACTTACAAACAGCTTAGTGAACTCCCCTGGTCATG
- - - - - - atctgca
- - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - - tgctcca
- - - - - - - - - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatgc