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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtttcagagaaattcatcttatttaatttgcattcatgccttgtatgttaagcttatgtccctaatttgttagttttgagcaaatatgttaatttatttcatctatgcagACCCTAGGGCCTGGTTTCTGGCTGCCATATACTTCATTACAGGATGCCCAGGTGCCTATTTTTCATGGTACCGGCCTCTTTATCGTGCCATGAG

Basic information

species Oryza sativa
transcript LOC_Os03g38600.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g38600.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G124938_T01 (Zea mays), 3'ss of exon 6
gtatggtttcagagaaattcatcttatttaatttgcattcatgccttgtatgttaagcttatgtccctaatttgttagttttg------agcaaatatgttaat-ttatttcatctatgcagACCCTAGGGCCTGGTTTCTGGCTGCCATATACTTCATTACAGGATGCCCAGGTGCCTATTTTTCATGGTACCGGCCTCTTTATCGTGCCATGAG
|| || |   | |  ||||   ||| ||| | ||   |   | | |   ||    |  |||| |    ||  |  || || ||      ||  | ||| |  || || || |||  ||||||| ||||||  |||||||||||| | ||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||| || |||||
gtgtgttcataaaataattt-ccttgttttacttttgtgtgttcttccaataaccatattatctaaaaaaaattgtatttctgttatttagtcagtatatcgatgttcttccatgcatgcagATCCTAGGATCTGGTTTCTGGCAGTCATATACTTCATTACCGGATGCCCAGGTGCCTACTTTTTATGGTACCGACCTCTTTATCGCGCGATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtccctaatttgttagttttgagcaaatatgttaatttatttcatctatgcagACCCTAGGGCCTGGTTTCTGGCTGCCATATACTTCATTACAGGATGCCCAGGTGCCTATTTTTCATGGTACCGGCCTCTTTATCGTGCCATGAG
                               tgttaat  putative branch site (score: 3)
                                         tttcatct  putative PPT
                          aaatatgttaatttat  TA-rich tract