1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tatatatatatatatcgctatgtttatcttactttttttcccagtggcttaactttatttttgtatcctgatttttttccatgccatcaactgcttgcagCATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAATTCTTGAGAACAATAAGTGCTTTTTGGTCGACTGTGGGTCTGATTTATTT
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGATGATGTTGTTCTTGAAACCACAGCCCCCAAGCTTTACAG CATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAATEST: gi|29674447|gb|CB670722.1|CB670722
genomic: CGATGATGTTGTTCTTGAAACCACAGCCCCCAAGCTTTACAGgtatgatttt ... ctgcttgcagCATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAAT
EST: ATATGTGACGATGATGTTGTTCTTGAAACCACAGCCCCCAAGCTTTACAG CATCAATAATGGTCAATTNAAGTTAGAAGACACAGTTCTGACAAAATCAATEST: gi|11442605|gb|BF430508.1|BF430508
genomic: ATATGTGACGATGATGTTGTTCTTGAAACCACAGCCCCCAAGCTTTACAGgtatgatttt ... ctgcttgcagCATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAAT
EST: ATATGTGACGATGATGTTGTTCTTGAAACCACAGCCCCCAAGCTTTACAG CATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAATEST: gi|58670145|gb|CK058831.1|CK058831
genomic: ATATGTGACGATGATGTTGTTCTTGAAACCACAGCCCCCAAGCTTTACAGgtatgatttt ... ctgcttgcagCATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAAT
EST: ATATGTGACGATGATGTTGTTCTTGAAACCACAGCCCCCAAGCTTTACAG CATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAAT
genomic: ATATGTGACGATGATGTTGTTCTTGAAACCACAGCCCCCAAGCTTTACAGgtatgatttt ... ctgcttgcagCATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAAT
ggcttaactttatttttgtatcctgatttttttccatgccatcaactgcttgcagCATCAATAATGGTCAATTAAAGTTAGAAGACACAGTTCTGACAAAATCAATTCTTGAGAACAATAAGTGCTTTTTGGTCGACTGTGGGTCTGATTTATTT
tcctgat putative branch site (score: 3)
aactttatttttgtat TA-rich tract