1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtttcattaatgtgttgctaagcttgtttaatccatcaaatacttgcagttacagatttgagtgggcttacctgtattttattgtgcatgccactcacagGCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGACACAAACACTTGGCACGAAGAGTTAGTTGATGATATTCCTTTGCAGCAAA
species | Oryza sativa |
transcript | LOC_Os03g22400.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATGTACCAAGAGTGCTG GCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGACEST: gi|86432774|gb|CI086385.1|CI086385
genomic: TCATGTACCAAGAGTGCTGgtaaacttat ... ccactcacagGCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGAC
EST: AATACCTTGATTCTCTTGGTTGTGTGGATCATCATGTACCAAGAGTGCTG GCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGACEST: gi|29627374|gb|CB632385.1|CB632385
genomic: AATACCTTGATTCTCTTGGTTGTGTGGATCATCATGTACCAAGAGTGCTGgtaaacttat ... ccactcacagGCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGAC
EST: AATACCTTGATTCTCTTGGTTGTGTGGATCATCATGTACCAAGAGTGCTG GCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGACEST: gi|88903540|gb|CI089078.1|CI089078
genomic: AATACCTTGATTCTCTTGGTTGTGTGGATCATCATGTACCAAGAGTGCTGgtaaacttat ... ccactcacagGCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGAC
EST: AATACCTTGATTCTCTNGGTTGTGTGGATCATCATGTACCAAGAGTGCNG GCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGACEST: gi|58594246|gb|CF992554.1|CF992554
genomic: AATACCTTGATTCTCTTGGTTGTGTGGATCATCATGTACCAAGAGTGCTGgtaaacttat ... ccactcacagGCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGAC
EST: TTGATTCTCTTGGTTGTGTGGATCATCATGTACCAAGAGTGCTG GCTAGATACATTGCGCGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGA
genomic: TTGATTCTCTTGGTTGTGTGGATCATCATGTACCAAGAGTGCTGgtaaacttat ... ccactcacagGCTAGATATATTGC-AGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGA
gcagttacagatttgagtgggcttacctgtattttattgtgcatgccactcacagGCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGACACAAACACTTGGCACGAAGAGTTAGTTGATGATATTCCTTTGCAGCAAA
ggcttac putative branch site (score: 14)
tgtattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcattaatgtgttgctaagcttgtttaatccatcaaatacttgcagttacagatttgagtgggcttacctgtattttattgtgcatgccactcacagGCTAGATATATTGCAGAGGAAGTGAAGGACAAGAGTAATAAAGAGATCGACACAAACACTTGGCACGAAGAGTTAGTTGATGATATTCCTTTGCAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
-tttcatt
- - - - - - tgttgct
- - - - - - - - - - -gcttgtt
- - - - - - - - - - - - - - - - -catcaaa
- - - - - - - - - - - - - - - - - - - - -acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatg