1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttgtttgccaagttgctatgattcaccgcacccatatttttttgcagccttgtgctagtttctagagtcaacctgtttgatcttgggattgaatttttagtccatcttatgtttcagTTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGCAATGAAATAAAGAATCACAAGTGGTTCAAGTCAGTAAACTGGAAGAAGC
species | Oryza sativa |
transcript | LOC_Os03g21620.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTAAGC-T-CGGCATATTTATCTAGCGAAGTTCATTCTCTGCTAAAAGGC TTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGCEST: gi|58669691|gb|CK058377.1|CK058377
genomic: TTAAGCTTCCGGCATATTTATCTAGCGAAGTTCATTCTCTGCTAAAAGGCgtaagttgtt ... tatgtttcagTTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGC
EST: TTAAGCTTCCGGCATATTTATCTAGCGAAGTTCATTCTCTGCTAAAAGGC TTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGCEST: gi|58682964|gb|CK071651.1|CK071651
genomic: TTAAGCTTCCGGCATATTTATCTAGCGAAGTTCATTCTCTGCTAAAAGGCgtaagttgtt ... tatgtttcagTTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGC
EST: TTAAGCTTCCGGCATATTTATCTAGCGAAGTTCATTCTCTGCTAAAAGGC TTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGCEST: gi|8956858|gb|BE230661.1|BE230661
genomic: TTAAGCTTCCGGCATATTTATCTAGCGAAGTTCATTCTCTGCTAAAAGGCgtaagttgtt ... tatgtttcagTTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGC
EST: TTAAGCTTCCGGCATATTTATCTAGCGAAGTTCATTCTCTGCTAAAAGGC TTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGC
genomic: TTAAGCTTCCGGCATATTTATCTAGCGAAGTTCATTCTCTGCTAAAAGGCgtaagttgtt ... tatgtttcagTTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGC
tagagtcaacctgtttgatcttgggattgaatttttagtccatcttatgtttcagTTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGCAATGAAATAAAGAATCACAAGTGGTTCAAGTCAGTAAACTGGAAGAAGC
gtttgat putative branch site (score: 11)
tccatctt putative PPT
attgaatttttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtttgccaagttgctatgattcaccgcacccatatttttttgcagccttgtgctagtttctagagtcaacctgtttgatcttgggattgaatttttagtccatcttatgtttcagTTACTGCACAAAGAAGCTGGCAGGAGGCTGGGCTGTGGACCAGGCGGGAGCAATGAAATAAAGAATCACAAGTGGTTCAAGTCAGTAAACTGGAAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC