1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attgatatggtattagtatctcatgtagtgctcagctcagcttcaactagtattcaattgtgtttctgttaatgaaccctttcaatctatttggtgacagCTGCTTGGCAGAGTATTTAATATCCTGCGTGAGAATAATCCTGATCTTGCTGGTGATAGACGAAGAACTGTTATGAGGCCTCCTCAAGTTCTTAGGGAAG
species | Oryza sativa |
transcript | LOC_Os03g21550.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAACTCGATACCCTTGGGAAGGAACTGACAGAGATTATAAATATGAAGAG CTGCTTGGCAGAGTATTTAATATCCTGCGTGAGAATAATCCTGATCTTGCTEST: gi|58597410|gb|CK007938.1|CK007938
genomic: CAACTCGATACCCTTGGGAAGGAACTGACAGAGATTATAAATATGAAGAGgttaatactc ... ttggtgacagCTGCTTGGCAGAGTATTTAATATCCTGCGTGAGAATAATCCTGATCTTGCT
EST: CAACTCGATACCC-TGGGAAGGAACTGACAGAGATTATAAATATGAAGAG CTGCTTGGCAGAGTATTCAATATCCTGCGTGAGAATAATCCTGATCTTGCTEST: gi|38478625|gb|CF962758.1|CF962758
genomic: CAACTCGATACCCTTGGGAAGGAACTGACAGAGATTATAAATATGAAGAGgttaatactc ... ttggtgacagCTGCTTGGCAGAGTATTTAATATCCTGCGTGAGAATAATCCTGATCTTGCT
EST: CAACTCGATACCCTTGGGAAGGAACTGACAGAGATTATAAAGATGAAGAG CTGCTTGGCAGAGTATTCAATATCCTGCGTGAGAATAATCCTGATCTTGCT
genomic: CAACTCGATACCCTTGGGAAGGAACTGACAGAGATTATAAATATGAAGAGgttaatactc ... ttggtgacagCTGCTTGGCAGAGTATTTAATATCCTGCGTGAGAATAATCCTGATCTTGCT
actagtattcaattgtgtttctgttaatgaaccctttcaatctatttggtgacagCTGCTTGGCAGAGTATTTAATATCCTGCGTGAGAATAATCCTGATCTTGCTGGTGATAGACGAAGAACTGTTATGAGGCCTCCTCAAGTTCTTAGGGAAG
tgttaat putative branch site (score: 58)
tctattt putative PPT
tattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgatatggtattagtatctcatgtagtgctcagctcagcttcaactagtattcaattgtgtttctgttaatgaaccctttcaatctatttggtgacagCTGCTTGGCAGAGTATTTAATATCCTGCGTGAGAATAATCCTGATCTTGCTGGTGATAGACGAAGAACTGTTATGAGGCCTCCTCAAGTTCTTAGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC