1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagctcaatttgcttcctattgaacttaagaactcagaagtttgtggtaccttgtttcaatataatgtcgctggggctactctctcaacagactgggttaacttctattgcaactatcaacgataaaaaataatctaaccagtcacattatgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAG
species | Oryza sativa |
transcript | LOC_Os03g20640.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAEST: gi|88571218|gb|CI662591.1|CI662591
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAEST: gi|29663267|gb|CB659542.1|CB659542
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAEST: gi|88209249|gb|CI208675.1|CI208675
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: TTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAEST: gi|86418084|gb|CI032293.1|CI032293
genomic: TTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAEST: gi|88571155|gb|CI662528.1|CI662528
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAEST: gi|89170010|gb|CI039287.1|CI039287
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAEST: gi|88982477|gb|CI027950.1|CI027950
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAEST: gi|86908184|gb|CI300665.1|CI300665
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATNATTTGTCAAAGAAEST: gi|88353819|gb|CI634610.1|CI634610
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
EST: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAG TTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
genomic: GCTGCTGTCAGTTATGCTTTTGGAGTTGCTTTCAGgtaagctcaa ... tgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAA
tattgcaactatcaacgataaaaaataatctaaccagtcacattatgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAG
atctaac putative branch site (score: 21)
ataaaaaataatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcaatttgcttcctattgaacttaagaactcagaagtttgtggtaccttgtttcaatataatgtcgctggggctactctctcaacagactgggttaacttctattgcaactatcaacgataaaaaataatctaaccagtcacattatgttgaacagTTGCTTGTATCTTCAACTTCTCTATCGGCACACAGATAATTTGTCAAAGAAAGATGTTCCAGAAATTTTTATGAAGAAGAAAGTGAAAAG
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