1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagatttgtgtacgcacagttgcacgcgtacctgctcacttgtgtgtactttagtgtttgttaggggttgaactgataagagtaagttttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACAAGCAGATAAATGAGCTGAGGACTGCAGTAAATGCTCATGCAAGTGACAG
species | Oryza sativa |
transcript | LOC_Os03g20310.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATG GAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACAEST: gi|29662679|gb|CB658954.1|CB658954
genomic: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttg ... ttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
EST: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATG GAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACAEST: gi|112786792|gb|EE591448.1|EE591448
genomic: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttg ... ttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
EST: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATG GAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
genomic: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttg ... ttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
gtgtactttagtgtttgttaggggttgaactgataagagtaagttttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACAAGCAGATAAATGAGCTGAGGACTGCAGTAAATGCTCATGCAAGTGACAG
aactgat putative branch site (score: 24)
ttttctctgc putative PPT
taagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttgtgtacgcacagttgcacgcgtacctgctcacttgtgtgtactttagtgtttgttaggggttgaactgataagagtaagttttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACAAGCAGATAAATGAGCTGAGGACTGCAGTAAATGCTCATGCAAGTGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG