1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgcaatatcacttatttacatgttcgattttttatagttatctttccgtttagctctcgtggcaatggtataatgttttgatatatggccttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACCATGTGTGTGAATCTCTGCGCAATAGACTGCAGAATGAG
species | Oryza sativa |
transcript | LOC_Os03g17980.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACEST: gi|58666104|gb|CK054790.1|CK054790
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
EST: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACEST: gi|58674982|gb|CK063669.1|CK063669
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
EST: TCGTTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACEST: gi|218478287|gb|FG959067.1|FG959067
genomic: TCGTT-ACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
EST: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACEST: gi|218482816|gb|FG952976.1|FG952976
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
EST: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATGGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACEST: gi|218482252|gb|FG960526.1|FG960526
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
EST: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACEST: gi|218502900|gb|FG954558.1|FG954558
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
EST: CTCGTTACTTAGCAGTGACTCCACCAGACACAGAACAGAAAGCCAAAATG ATTGATGAAGATCCCCTTCAEST: gi|2317303|gb|C22357.1|C22357
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCA
EST: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACEST: gi|218484843|gb|FG952392.1|FG952392
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
EST: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACEST: gi|29614995|gb|CB620008.1|CB620008
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
EST: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATG ATTGATGAAGATACCCTTCAAGATGTCGTANACTTGGGTTATGGAAAGGAC
genomic: CTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctt ... ttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGAC
ccgtttagctctcgtggcaatggtataatgttttgatatatggccttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACCATGTGTGTGAATCTCTGCGCAATAGACTGCAGAATGAG
ttttgat putative branch site (score: 4)
cctttttt putative PPT
tataatgttttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaatatcacttatttacatgttcgattttttatagttatctttccgtttagctctcgtggcaatggtataatgttttgatatatggccttttttgaagATTGATGAAGATACCCTTCAAGATGTCGTAAACTTGGGTTATGGAAAGGACCATGTGTGTGAATCTCTGCGCAATAGACTGCAGAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG