1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttgggttcattctttgatggcactgttcttgcaagaactttttccaaaaaaaaaagtccagtattattaatgttattcccccctgcttggattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATGTTGGTTATGGCGGTGTAGTTAGGGGAATCCACATAGGTTCTTCCGCCT
species | Oryza sativa |
transcript | LOC_Os03g17950.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|86868735|gb|CI333112.1|CI333112
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|88470160|gb|CI407431.1|CI407431
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: TTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|88483071|gb|CI420342.1|CI420342
genomic: TTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: GCTCTGTACTGGGACAAAAANTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|88263515|gb|CI367289.1|CI367289
genomic: GCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: CTCCGATTTGTGCTCTGTACTGGGACAAAAAGTTCCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|29618227|gb|CB623239.1|CB623239
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|88841205|gb|CI080659.1|CI080659
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|29618226|gb|CB623238.1|CB623238
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|88218016|gb|CI217865.1|CI217865
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAGCGGCATTGTGGGATGCTGATCTTGCTTCTGTGCCACCAAATAAAEST: gi|38480901|gb|CF964990.1|CF964990
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCT-ATCTTGCTTCTGTGCCACCAAATAAA
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATEST: gi|88273050|gb|CI388506.1|CI388506
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTGTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGGTTCTGTGCCACCAAAATAAAEST: gi|88510425|gb|CI437931.1|CI437931
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACC-AAATAAA
EST: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAG GGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
genomic: CTCCGATTTTTGCTCTGTACTGGGACAAAAAGTTGCAGTTTTCTCTTCAGgtgatttaaa ... gattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAAT
caaaaaaaaaagtccagtattattaatgttattcccccctgcttggattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATGTTGGTTATGGCGGTGTAGTTAGGGGAATCCACATAGGTTCTTCCGCCT
tattaat putative branch site (score: 8)
ttttcc putative PPT
agtattattaatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgggttcattctttgatggcactgttcttgcaagaactttttccaaaaaaaaaagtccagtattattaatgttattcccccctgcttggattttccagGGAAGAACGGCATTGTGGGATGCTATCTTGCTTCTGTGCCACCAAATAAATGTTGGTTATGGCGGTGTAGTTAGGGGAATCCACATAGGTTCTTCCGCCT
- - - - - - - ttgatgg
- - - - - - - - - - - - - -tcttgca
- - - - - - - - - - - - - - - - - - - - - - -caaaaaa