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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG

Basic information

species Oryza sativa
transcript LOC_Os03g16980.4
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 5
gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG
||   ||||  |   ||||  ||| | |  |||   ||  || ||| |||  |   ||| |  | |   |||  | ||| | ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||
gtcattgttcatc--atgcc-attgattcttccagcgc--ctcatgtgaaaaactcaattacagaa---tttatttttgaattgcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 12
gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG
||  |||||  |   ||||  ||| | |  |||   ||  || ||| |||  |   | | |  | |   |||  | ||| | ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |||||||  |||||||||||||| |||||||| || ||||
gtcagtgttcatc--atgcc-attgattcttccagcgc--ctcatgtgaaaaactcagttactgaa---tttatttttgaattgcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G382038_T01 (Zea mays), 3'ss of exon 7
gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG
||  |||||  |   ||||  ||| | |  ||| | ||  || ||| |||  |   | | |  | |   |||  | ||| | ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |||||||  |||||||||||||| |||||||| || ||||
gtcagtgttcatc--atgcc-attgattcttccaacgc--ctcatgtgaaaaactcagttactgaa---tttatttttgaattgcagGATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 6
gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG
||  |||||  |   ||||| ||| | |  |||   ||  || ||| |||  |   | | |  | |    ||||| ||| | ||||||||||||||||| || || ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
gtcagtgttcatc--atgct-attgattcttccaccgc--ctcatgtgaaaaactcagttacagaa----tttattttgaattgcagGATTTTGTTGACATCAACATCTGAAGTTTATGGTGATCCGCTTGAGCATCCTCAAACCGAGGCCTACTGGGGCAATGTTAACCCAATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G157772_T02 (Zea mays), 3'ss of exon 3
gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG
||  |||||  |   ||||  ||| | |  ||    ||  || ||| |||  |   | | |  | |   |||  | ||| | |||||||||||||| || || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||
gtcagtgttcatc--atgcc-attgattcttctagcgc--ctcatgtgaaaaactcagttacagaa---tttatttttgaattgcagGATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 6
gttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG
||| | | |||    |      || | |  |   |      | || |  | |    |||  |   |  || |  |  |||    |||||| ||| | || || || || ||||| || || ||||| |||||||| || ||||| |||  ||| |||||||||||||||||||| |
gtttgggattt---gacttcattttattcctttaaccaggatcataa--atttctcaatttattaaa-ttatgttaatgtttaacagGATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 6
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 3'ss of exon 6
-----------gttggtgtttttttaatgctgattaacttgtcctatgcaact-tatgagaactatataatgaagggaggtttttatgttgtactg-cagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG
           ||| |           ||     |  || ||  || | | || | |       ||   ||||       |  ||   || |   | ||||||| |  | || || |||||||||||||| || |||||  | ||||| ||||| |||||||  ||||||||||| || ||||||||||
ccacttaatcggtttggaccgagaagctgtgacatctctagtaataagtatctatgtagctctcatccgatgattaaccttggttgctttatggaggcagGATTCTTCTCACGTCTACCTCTGAAGTTTATGGAGATCCTTTGGAGCATCCTCAGACAGAGGAATACTGGGGAAACGTAAACCCAATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58677155|gb|CK065842.1|CK065842
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|33680606|gb|CF308845.1|CF308845
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58678023|gb|CK066710.1|CK066710
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|30229035|gb|CB966926.1|CB966926
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58665123|gb|CK053809.1|CK053809
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACT
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACT
EST: gi|163923367|gb|EG711100.1|EG711100
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|25800080|gb|CA756041.1|CA756041
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGAATC-GCTTGAGCACC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGA-TCCGCTTGAGCACC
EST: gi|38478163|gb|CF962296.1|CF962296
EST:     CAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCTGCTTGAGCACC
genomic: CAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC-GCTTGAGCACC
EST: gi|163927504|gb|EG710716.1|EG710716
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|30226568|gb|CB964460.1|CB964460
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|313080404|gb|HO213412.1|HO213412
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|33675428|gb|CF303667.1|CF303667
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58601617|gb|CK012145.1|CK012145
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGAC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGAC
EST: gi|58682312|gb|CK070999.1|CK070999
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTC
EST: gi|29668646|gb|CB664921.1|CB664921
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|428184|gb|D24332.1|D24332
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGNGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|29637729|gb|CB642738.1|CB642738
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58672962|gb|CK061648.1|CK061648
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|30226636|gb|CB964528.1|CB964528
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58686439|gb|CK075126.1|CK075126
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58659240|gb|CK047920.1|CK047920
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58666035|gb|CK054721.1|CK054721
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58664219|gb|CK052905.1|CK052905
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTCGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|38476842|gb|CF960975.1|CF960975
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58664364|gb|CK053050.1|CK053050
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58659773|gb|CK048453.1|CK048453
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58590735|gb|CF989043.1|CF989043
EST:     GTTATCGGAACCCTGAA-ATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58672357|gb|CK061043.1|CK061043
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC
EST: gi|58655602|gb|CK044282.1|CK044282
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC
EST: gi|33380802|gb|CF196145.1|CF196145
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|30228342|gb|CB966233.1|CB966233
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|33813747|gb|CF332760.1|CF332760
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCCGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58656016|gb|CK044696.1|CK044696
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|29668686|gb|CB664961.1|CB664961
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|14981678|gb|BI306356.1|BI306356
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTG
                aactatataatgaa  TA-rich tract