1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cacatggcagatgattgcaaatatatcatcagcttatattgccgtgcatgtggaaggtggaattaacatccgatcctcacatttgtatctgtttcaatagCTTTACGCAGAATCACTCGCTCGTTTTCAAGGAGGATCACCTTATATCTACCCTCTGTATGGGCTAGCAGAGCTCCCTCAG
species | Oryza sativa |
transcript | LOC_Os03g16900.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACTATCTCGATGAACCTGCAATTGACACTGTGAAAAGGATGAAG CTTTACGCAGAATCACTCGCTCGTTTTCAAGGAGGATCACCTTATATCTACEST: gi|56158049|gb|C71857.2|C71857
genomic: AACTATCTCGATGAACCTGCAATTGACACTGTGAAAAGGATGAAGgtactatatg ... gtttcaatagCTTTACGCAGAATCACTCGCTCGTTTTCAAGGAGGATCACCTTATATCTAC
EST: ATGATAACTATCTCGATGAACCTGCAATTGACACTGTGAAAAGGATGAAG CTTTACGCAGAATCACTCGCTCGTTTTCAAGGAGGATCACCTTATATCTAC
genomic: ATGATAACTATCTCGATGAACCTGCAATTGACACTGTGAAAAGGATGAAGgtactatatg ... gtttcaatagCTTTACGCAGAATCACTCGCTCGTTTTCAAGGAGGATCACCTTATATCTAC
gcatgtggaaggtggaattaacatccgatcctcacatttgtatctgtttcaatagCTTTACGCAGAATCACTCGCTCGTTTTCAAGGAGGATCACCTTATATCTACCCTCTGTATGGGCTAGCAGAGCTCCCTCAG
tcctcac putative branch site (score: 21)
tctgtttc putative PPT
aattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatggcagatgattgcaaatatatcatcagcttatattgccgtgcatgtggaaggtggaattaacatccgatcctcacatttgtatctgtttcaatagCTTTACGCAGAATCACTCGCTCGTTTTCAAGGAGGATCACCTTATATCTACCCTCTGTATGGGCTAGCAGAGCTCCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
cacatgg
- - - - - -tgattgc
- - - - - - - - - - - - - catcagc
- - - - - - - - - - - - - - - - - - - - - - tgcatgt