1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacggaaaaagagacattttgctcctgttttctcattaattgatcagcacaaagagatgttgcaagaatttcaccttttgtcgatgatgtttccgtgttttaatatgtatttataatgcagAAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTCGGTGTGCTCCATCATGGGAAGAAAGTCAGAGATGATAATAAAACCTTAA
species | Oryza sativa |
transcript | LOC_Os03g16700.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAG AAAACTGTTCTGGAGGCAGTAAEST: gi|58694132|gb|CK082819.1|CK082819
genomic: CTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAGgtacggaaaa ... tataatgcagAAAACTGTTCTGGAGGCAGTAA
EST: CTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAG AAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTCEST: gi|29617377|gb|CB622389.1|CB622389
genomic: CTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAGgtacggaaaa ... tataatgcagAAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTC
EST: CTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAG AAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTCEST: gi|218487578|gb|FG960601.1|FG960601
genomic: CTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAGgtacggaaaa ... tataatgcagAAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTC
EST: CTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAG AAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTC
genomic: CTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAGgtacggaaaa ... tataatgcagAAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTC
aatttcaccttttgtcgatgatgtttccgtgttttaatatgtatttataatgcagAAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTCGGTGTGCTCCATCATGGGAAGAAAGTCAGAGATGATAATAAAACCTTAA
ttttaat putative branch site (score: 3)
tgttttaatatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggaaaaagagacattttgctcctgttttctcattaattgatcagcacaaagagatgttgcaagaatttcaccttttgtcgatgatgtttccgtgttttaatatgtatttataatgcagAAAACTGTTCTGGAGGCAGTAAATGCCATACTTGGAGGTGGTCTGCGTGTCGGTGTGCTCCATCATGGGAAGAAAGTCAGAGATGATAATAAAACCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG