1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagatgtattatccttttggctacattttttagctggcatagcaaacgcatgataagtctacaactgccttccatctctgataagtaaccaaccatataattccgaatttgtctactttgtatgggatgtaactaaccatttaattcttttgattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
species | Oryza sativa |
transcript | LOC_Os03g16570.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAAGTGCCTCTTTCCGAAAAAG TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGEST: gi|218498707|gb|FG952314.1|FG952314
genomic: GGAAGTGCCTCTTTCCGAAAAAGgtaagatgta ... gattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
EST: TTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAG TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAAEST: gi|87009256|gb|CI276570.1|CI276570
genomic: TTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAGgtaagatgta ... gattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAA
EST: TCAGGGAAGTGCCTCTTTCCGAAAAAG TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
genomic: TCAGGGAAGTGCCTCTTTCCGAAAAAGgtaagatgta ... gattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
atttgtctactttgtatgggatgtaactaaccatttaattcttttgattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
ttcttttg CT-rich tract
atttaattcttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgtattatccttttggctacattttttagctggcatagcaaacgcatgataagtctacaactgccttccatctctgataagtaaccaaccatataattccgaatttgtctactttgtatgggatgtaactaaccatttaattcttttgattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA