1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gaaaaatgaatcagcattcgaatatacatcctaaatatgctgaagccatgcaacaaattctgtccaatgtctcatagcagcaaaatattttcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAACAATGGAACAG
species | Oryza sativa |
transcript | LOC_Os03g14990.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG ATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGTCEST: gi|29658486|gb|CB654761.1|CB654761
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGgtgtgatcct ... tcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCC
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG ATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCEST: gi|58587366|gb|CF985674.1|CF985674
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGgtgtgatcct ... tcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCC
EST: CTGCAGGGGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG ATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGTCEST: gi|218490820|gb|FG955462.1|FG955462
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGgtgtgatcct ... tcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCC
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG ATCCTGGCGTTTGGTTTCCAAGGGTGCTTCAATGTTGTACTACCAGAAAGAEST: gi|33674921|gb|CF303160.1|CF303160
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGgtgtgatcct ... tcaattgcagATCTTGGCGTTT-GTGTCCAA-GGTGCATCAA-GTTGTACTACCAG-AAGA
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG ATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCEST: gi|218496154|gb|FG946668.1|FG946668
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGgtgtgatcct ... tcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCC
EST: TGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAAATCTGGAGTAGAG ATCTTGGCGTTAGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGTCEST: gi|218497637|gb|FG960443.1|FG960443
genomic: TGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAA-TCTGGAGTAGAGgtgtgatcct ... tcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCC
EST: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAG ATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGTC
genomic: CTGCAGGAGCTCTTGCAAAGAAAATTCTTAAGCTCAAATCTGGAGTAGAGgtgtgatcct ... tcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCC
ccatgcaacaaattctgtccaatgtctcatagcagcaaaatattttcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAACAATGGAACAG
tattttc CT-rich tract
aaaatattttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaaatgaatcagcattcgaatatacatcctaaatatgctgaagccatgcaacaaattctgtccaatgtctcatagcagcaaaatattttcaattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAACAATGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- aaaatgaa
- - - - - - agcattc
- - - - - - - - - - - - tacatcc
- - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcaaa