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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcagagaaaaagtttggcgtcagtcttaccgcattttattctcctccaaggatgacatcttgatctgtttgcttctgttttgttcagGCATTCGGATTCAGAGCTTCAAGAAAGGGCAAATTACAATGGACGTCGACTTTCGTTGGGGCGGGGATCCTAATATTGTCCTTGCAGTTGACACTCTAGT

Basic information

species Oryza sativa
transcript LOC_Os03g14700.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g14700.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G359879_T01 (Zea mays), 3'ss of exon 4
gtttcagagaaaaagtttggcgtcagtcttaccgcattttattctcctccaaggatgacatcttgatctgtttgcttctgttttgttcagGCATTCGGATTCAGAGCTTCAAGAAAGGGCAAATTACAATGGACGTCGACTTTCGTTGGGGCGGGGATCCTAATATTGTCCTTGCAGTTGACACTCTAGT
||| |  ||| |||   ||| ||||   |     |  |        |||  |||||     | |||  |      |||||   || ||||||||||||||||| || || ||||||||||| |||||||||||| | ||||| || |||||||||||||| |||||  | |||||||| || || || ||
gttgccaagacaaaa--tggtgtcaacttgtatacgct--------ctcataggatttggccatgacttaagctattctg---tgctcagGCATTCGGATTCACAGTTTTAAGAAAGGGCAGATTACAATGGACATGGACTTCCGCTGGGGCGGGGATCCAAATATCATTCTTGCAGTCGAGACACTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttattctcctccaaggatgacatcttgatctgtttgcttctgttttgttcagGCATTCGGATTCAGAGCTTCAAGAAAGGGCAAATTACAATGGACGTCGACTTTCGTTGGGGCGGGGATCCTAATATTGTCCTTGCAGTTGACACTCTAGT
                         tcttgat  putative branch site (score: 4)
                                   tttgcttctgtttt  putative PPT
                                             ttttgtt  TA-rich tract