1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaataaaacaaaactattttctatatctggtctggaatgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAATTGAACAGATACATCCCTACAGCTGCTGCATTTGGTGGAGTCTGCATTG
species | Oryza sativa |
transcript | LOC_Os03g11440.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTC-AG GAGCAACAAATGGTGATGCCCAGGCCCATCGTGAGTCGAATTTACAGAAAGEST: gi|29627508|gb|CB632519.1|CB632519
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATG-CCAGG-CCATCGTGAGTCGAATTTACAGAAAG
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88907158|gb|CI089952.1|CI089952
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|86519507|gb|CI159713.1|CI159713
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|86435779|gb|CI107012.1|CI107012
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: TGTTGCTATACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88837107|gb|CI078467.1|CI078467
genomic: TGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: AGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88839105|gb|CI378029.1|CI378029
genomic: AGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: AACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|33666143|gb|CF297110.1|CF297110
genomic: AACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88848102|gb|CI086624.1|CI086624
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|27577737|gb|CB000432.1|CB000432
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88991636|gb|CI019814.1|CI019814
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|29616183|gb|CB621195.1|CB621195
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|86600394|gb|CI356151.1|CI356151
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|29627509|gb|CB632520.1|CB632520
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88831453|gb|CI083847.1|CI083847
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|86862384|gb|CI345500.1|CI345500
genomic: GATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: AAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|86425324|gb|CI070421.1|CI070421
genomic: AAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|86260506|gb|CI066379.1|CI066379
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|15851049|gb|BI799325.1|BI799325
genomic: GATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: ATCTGGTTCATCAGCACAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88247484|gb|CI247333.1|CI247333
genomic: ATCTGGTTCATCAGCA-AAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: TGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88265008|gb|CI368782.1|CI368782
genomic: TGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88841953|gb|CI081209.1|CI081209
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88840054|gb|CI079508.1|CI079508
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: CTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88840619|gb|CI080073.1|CI080073
genomic: CTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAA GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88959632|gb|CI002242.1|CI002242
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|89162101|gb|CI103637.1|CI103637
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|27554203|gb|CA998103.1|CA998103
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGA-EST: gi|88962546|gb|CI097698.1|CI097698
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|29665157|gb|CB661432.1|CB661432
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|33796315|gb|CF324025.1|CF324025
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|9864956|gb|AU100706.1|AU100706
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88290799|gb|CI542510.1|CI542510
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: AACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|86490193|gb|CI132826.1|CI132826
genomic: AACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|66914888|gb|CX101736.1|CX101736
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88219925|gb|CI219485.1|CI219485
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: TGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAAEST: gi|88249276|gb|CI249125.1|CI249125
genomic: TGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: ATGTTGCTAAACAGCTCAAG GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: ATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
gcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAATTGAACAGATACATCCCTACAGCTGCTGCATTTGGTGGAGTCTGCATTG
aatttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaataaaacaaaactattttctatatctggtctggaatgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAATTGAACAGATACATCCCTACAGCTGCTGCATTTGGTGGAGTCTGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG