1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaccaaccatatatcaaatcctttggctagcttttcgcattgaaacgtcgatattcttccggaaacttttttttatatataacctgataagaactttggcttttgttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACCTTTCCGCACCTCAAACATTCCGATCCAAGGAGATCTCCAAGAGCAATG
species | Oryza sativa |
transcript | LOC_Os03g09250.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|58685454|gb|CK074141.1|CK074141
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: AAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|3760166|gb|C97424.1|C97424
genomic: AAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: AAAGATGAAGTCTGTCTTGGTTGGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|11443012|gb|BF430899.1|BF430899
genomic: AAAGATGAAGTCTGTCTTGGTTG-ATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|218494828|gb|FG945589.1|FG945589
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATCAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|29686334|gb|CB682609.1|CB682609
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|58660358|gb|CK049038.1|CK049038
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCAEST: gi|163929263|gb|EG711024.1|EG711024
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCA
EST: AGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|218504141|gb|FG945017.1|FG945017
genomic: AGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|2312304|gb|C28459.1|C28459
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|218485553|gb|FG949786.1|FG949786
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|58657984|gb|CK046664.1|CK046664
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACEST: gi|218487632|gb|FG964358.1|FG964358
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
EST: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAG CCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
genomic: CAAAGATGAAGTCTGTCTTGGTTGATTTCCTAGTTGGTGCTGGAATAAAGgtaccaacca ... gttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAAC
cggaaacttttttttatatataacctgataagaactttggcttttgttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACCTTTCCGCACCTCAAACATTCCGATCCAAGGAGATCTCCAAGAGCAATG
cttttgttttc CT-rich tract
ttttttttatatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccaaccatatatcaaatcctttggctagcttttcgcattgaaacgtcgatattcttccggaaacttttttttatatataacctgataagaactttggcttttgttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACCTTTCCGCACCTCAAACATTCCGATCCAAGGAGATCTCCAAGAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA