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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaattttaactccctgcccctctctctcataaagtacacaggctcatgtgagaattctttgttcaacttattaacaattaattatttgacttgttgaagGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATG

Basic information

species Oryza sativa
transcript LOC_Os03g08070.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g08070.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G855347_T02 (Zea mays), 3'ss of exon 1
ttaattttaactccctgcccctc-tctctcataaagtacacaggctcatgtgagaattctttgttcaacttattaacaattaattatttgacttgtt--gaagGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATG
 |  | | |  ||     |  |  | |  ||  |||| || | |    | | |    | || | |  |     |||||   | ||||||||||||||  ||||||||| ||  ||||||| | ||| |||  ||||||||||||||||||||| |||||||| ||||| |||
cttgtgtcacttcttcaactttgatgttccagtaagttcagatgtc--tttcactcgttttagctggataagctaacagcca-ttatttgacttgttttgaagGATGGCCCGCTAAAGATTAGAGCAACATGTACTGGACCATCATCAACAATAGCTAAGATAGTCCGCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622946|gb|CB627957.1|CB627957
EST:     CAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGG                         GATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATT
genomic: CAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGGgtatgtgcat ... cttgttgaagGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtgagaattctttgttcaacttattaacaattaattatttgacttgttgaagGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATG
        aattctttgttcaact  TA-rich tract