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gtaaaatctacaatctttggttatatttgtataacaacatcgccagtttacattctgcttgattcaacattgttgctttagttgatgatgcctttcatctgagtaacattttcactcaactatttattattgattaatctgtctaatcccatcatttggtctttctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTACCGATAGGAAGGAGAAGACACCTGCCAAGGCCGAGACCAATTTATTGTT
species | Oryza sativa |
transcript | LOC_Os03g07570.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGAEST: gi|27553979|gb|CA997879.1|CA997879
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGA
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|84117000|gb|CD150767.1|CD150767
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGEST: gi|116875647|gb|EC366155.1|EC366155
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATG
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|29688224|gb|CB684499.1|CB684499
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|38473892|gb|CF958024.1|CF958024
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCGAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|117224901|gb|CT845968.1|CT845968
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|86519627|gb|CI159833.1|CI159833
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: AAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|29636945|gb|CB641954.1|CB641954
genomic: AAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: TGGATTTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|86497504|gb|CI140137.1|CI140137
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|87015740|gb|CI277698.1|CI277698
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTAEST: gi|14571325|gb|BI118693.1|BI118693
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
EST: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAA TCATTGGAGACGTTAGARGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
genomic: TGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatcta ... ctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTA
ctatttattattgattaatctgtctaatcccatcatttggtctttctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTACCGATAGGAAGGAGAAGACACCTGCCAAGGCCGAGACCAATTTATTGTT
gtctaat putative branch site (score: 165)
tctttctgtt putative PPT
tattattgattaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatctacaatctttggttatatttgtataacaacatcgccagtttacattctgcttgattcaacattgttgctttagttgatgatgcctttcatctgagtaacattttcactcaactatttattattgattaatctgtctaatcccatcatttggtctttctgttgtcagTCATTGGAGATGTTAGAGGGAGGGGATTGATGCTTGGGGTGGAGCTTGTTACCGATAGGAAGGAGAAGACACCTGCCAAGGCCGAGACCAATTTATTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA