Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttatctgaaagaattaccatgcacactatggagcgttcgtatatcctaagagccttttatgttacttaaaactctgtttatgttatgccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG

Basic information

species Oryza sativa
transcript LOC_Os03g06120.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g06120.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G027821_T01 (Zea mays), 3'ss of exon 6
---gttttatctgaaagaattaccatgcacactatggagcgttcgtatatcctaagagccttttatgttacttaaaactctgtttatgttatgccgctga-cagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG
   || |    ||        || ||   |    |       | | | |      ||  | || |   ||| | ||  |||| |   ||  |||  |||| |||||||| |||  ||| || ||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| 
attgtgtacattggtgactcgacaatagccttctttagatactagcaaacttattgaagccttcag--tacctgaagttctgatg--gtcgtgcttctgaacagGGAGGCTGCTGTGACGACTTCCTTTCACATCTGCTGTGTTGTTGCTGCGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGCGGAGCTTATA

upper sequence: LOC_Os03g06120.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA16G23240.1 (Glycine max), 3'ss of exon 7
------gttttatctgaaagaattaccatgcacactatggagcgttcgtatatccta-agagccttttatgttacttaaaactctgtttatgttatgccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG------
      ||  ||       |||||       | |    |    |||  |  ||  |  ||   ||| ||||||   | |    |  || |  || |     || ||||| || |  ||||||||||| || || ||||||||||||||||||||||| ||||| |||||| || | ||||| ||||| ||||| | | | |      
aaggttgtagtactctttggaatttagtgttatatggagacttgttttttcattttctagtatcttctatgttttattag---ccattgacattcta----tgccagGGGGGCTTTATTGATGATTTTCTTTCTCATTTGATGTGTTGTTGCTGTGCCCTTGTGCAAGAAAGGAGAGAAGTGGAGATCCGTGGTGTTGAAGGTATGA

upper sequence: LOC_Os03g06120.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA02G05130.1 (Glycine max), 3'ss of exon 7
------gttttatctgaaagaattaccatgcacactatggagcgttcgtatatcctaaga-gccttttatgttacttaaaactctgtttatgttatgccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG
      |   ||       |||||   |   | |    |    |||    |||  |  |    ||||||||||   | |    |  ||||  || |     || ||||| || |  ||||||||||| || || |||||||||||||| |||||||| ||||| |||||| |||| ||||| ||||| | ||| | | | |
aaggttggagtactctttggaatttagagttatatggagacttgttttagtattttctggtatcttttatgttttattag---ccatttacattcta----tgccagGGGGGATTTATTGATGATTTTCTTTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAAAGGCGAGAAGTGGAGATCCATGGGGTTGAAG

upper sequence: LOC_Os03g06120.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA01G36860.1 (Glycine max), 3'ss of exon 7
gttttatctgaaagaattaccatgcacactatggagcgttcgtatatcctaagagccttttatgttacttaaaac--tctgtttat-gtta-tgccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG
  | ||| ||  || |||     ||||||   |||   || ||||     |      ||    ||  ||| |||   | |    || | || |  |  || ||||| || |  |||||||||||||| || |||||||||||||| |||||||| ||||| ||||||||| | ||||| ||||| |||||   |  ||
-atgtatttgctaggatt--tgagcacacatcggaat-ttagtattaagcatacattttgcgggtctctttaaatgttttacccatagctactttctatgccagGGGGGATTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTAGTG

upper sequence: LOC_Os03g06120.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA11G08430.2 (Glycine max), 3'ss of exon 5
gttttatctgaaagaattaccatgcacactatggagcgttcgtatatcctaagagccttttatgttacttaaaactctgtttatgttatgccgct------gacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG
    ||| ||  | ||||   | ||| ||   |||   || ||||     |      |  |    |  |||||  | | ||||      ||  ||      |  |||| || |  |||||||||||||| || |||||||||||||| |||||||| ||||| ||||||||| | ||||| ||||| |||||   |  ||
---gtatttgttaaaatt--taagcatacatcggaat-ttagtattaagcatacatttgctggtctctttaaatgtttttttacccacagctactttctatgctagGGGGGCTTTATTGATGATTTCCTCTCTCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGTGGGCTTACTG

upper sequence: LOC_Os03g06120.3 (Oryza sativa), 3'ss of exon 6
lower sequence: AT4G35920.3 (Arabidopsis thaliana), 3'ss of exon 7
--gttttatctgaaagaattaccatgcacactatggagcgttcgtatatcctaagagccttttatgttacttaaaactctgtttatgttatgccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG
    || |   | ||  || |   |  | | |     |  |  || ||| | |      | |   ||       ||  ||   | | || ||    |  |||||||| | |||||| ||||| ||||| ||| | ||||||||||||||||| ||||| ||||||  | | ||||||||||||||||| || ||||
aaaattcagtagtaactatcatggttgagattgaaatggctatgtttatgccactcaa-tgtagagtcggaatgaatgcttaatgttttctgat-ttcgcagGGAGGATTCATTGACGATTTTCTATCTCATGTAATGTGTTGTTGCTGTGCCCTTGTACAAGAACTGAGAGAAGTTGAGATTCGTGGGGCATATG

upper sequence: LOC_Os03g06120.3 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv00s0349g00020.t01 (Vitis vinifera), 3'ss of exon 5
----gttttatctgaaagaattaccatgcacactatggagcgttcgtatatcctaagagccttttatgttacttaaaactctgtttatgttatgccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG
       || ||  | |   | | |||  ||   | | ||| || || |  | |       ||   ||    ||     |||  ||||    |  |  ||||||||||| |   ||||||||||||| |||||| |||||||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||| | |||||
tttgagattctcccacaatctaatcattaac---aggtagctttagtgtcgcatgtttaatttccttgaatattttgcttcttattatccc-tttctttgacagGGAGGCTTGTTTGATGATTTCCTCTCACATCTGATGTGTTGCTGCTGTGCCCTTGTCCAAGAATGGCGAGAAGTGGAGATCCGTGGGGTTTATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25806375|gb|CA762336.1|CA762336
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|87021652|gb|CI276051.1|CI276051
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88961682|gb|CI096900.1|CI096900
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88269959|gb|CI381257.1|CI381257
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|86542310|gb|CI182516.1|CI182516
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|16753523|gb|BM037902.1|BM037902
EST:     GTTACACTT-CTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTT-CTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88961463|gb|CI096770.1|CI096770
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|44674180|gb|CR287614.1|CR287614
EST:     TTACACTTGCGGTGTGAGGAGAAAGCTTCTGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: TTACACTTGCTGTGTGAGGAGAAAGCTTC-GTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88273954|gb|CI394360.1|CI394360
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTGGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|29637808|gb|CB642817.1|CB642817
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|33803496|gb|CF327623.1|CF327623
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88459853|gb|CI524312.1|CI524312
EST:     TGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGGGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: TGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88474728|gb|CI411999.1|CI411999
EST:     AGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: AGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|86845185|gb|CI340315.1|CI340315
EST:     GAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|89169017|gb|CI020557.1|CI020557
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|86865997|gb|CI336768.1|CI336768
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTTTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88374950|gb|CI521016.1|CI521016
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88960115|gb|CI381993.1|CI381993
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|89178286|gb|CI391465.1|CI391465
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCACTGATGATTTCCTATCACATTTGATGTGTTGTTGGCTGTGC
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTT-GCTGTGC
EST: gi|88962482|gb|CI097634.1|CI097634
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|27548516|gb|CA766467.2|CA766467
EST:     GGTACACTTGCTGTGTGANGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGANGGT-GCATTGATGATTTCCTATCACATTTGATGNGNTGGTGCTGGGC
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGA-GGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGC
EST: gi|88846689|gb|CI373457.1|CI373457
EST:     GAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|58596859|gb|CK007387.1|CK007387
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88286952|gb|CI520262.1|CI520262
EST:     TCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: TCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|87034567|gb|CI189191.1|CI189191
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|86886085|gb|CI321121.1|CI321121
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTTCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88906222|gb|CI375294.1|CI375294
EST:     GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
EST: gi|88250929|gb|CI248780.1|CI248780
EST:     GTAACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCG                         GGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG
genomic: GTTACACTTGCTGTGTGAGGAGAAAGCTTCGTCAAAAGCTAAATATTGCGgtaaattttc ... ccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctaagagccttttatgttacttaaaactctgtttatgttatgccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG
            ttttatgttacttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttatctgaaagaattaccatgcacactatggagcgttcgtatatcctaagagccttttatgttacttaaaactctgtttatgttatgccgctgacagGGAGGTTGCATTGATGATTTCCTATCACATTTGATGTGTTGTTGCTGTGCGCTTGTTCAAGAATGGCGGGAAGTTGAGATTCGTGGAGCTTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT