1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgcagtgattgtattgttttaatggaatcctgttattgaatgtttgctatctttgcttagatttttcttagctctgaaacccacaaaaataaatgcagGAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGTGCTATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTT
species | Oryza sativa |
transcript | LOC_Os03g05720.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAG GAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGTEST: gi|218487485|gb|FG950701.1|FG950701
genomic: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAGgtatgcagtg ... ataaatgcagGAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGT
EST: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAG GAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGTEST: gi|2428176|gb|C72639.1|C72639
genomic: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAGgtatgcagtg ... ataaatgcagGAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGT
EST: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGA-CAACTCTTCATTGAG GAAGAGCAAGAGAAAAGGTTGGAGGAACCTT-CGAGGCTGANTTAAGATAGEST: gi|218485889|gb|FG950181.1|FG950181
genomic: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAGgtatgcagtg ... ataaatgcagGAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTA-GATAG
EST: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAG GAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGTEST: gi|218482933|gb|FG946915.1|FG946915
genomic: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAGgtatgcagtg ... ataaatgcagGAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGT
EST: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAG GAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGT
genomic: ACCGCTCTATTCGGCGTTGGGATCGTACTGAAGAACAACTCTTCATTGAGgtatgcagtg ... ataaatgcagGAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGT
ttgctatctttgcttagatttttcttagctctgaaacccacaaaaataaatgcagGAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGTGCTATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTT
ttagatttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcagtgattgtattgttttaatggaatcctgttattgaatgtttgctatctttgcttagatttttcttagctctgaaacccacaaaaataaatgcagGAAGAGCAAGAGAAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGTGCTATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG