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...aacatatatacactacaatgtgccgagataggtttataacaacaatgacttcgatatggatgatattgtttggataccgaaactcagacttttcctacagGGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAGATTGGTCAGGGGGCTCTTCTTGGAGCTGGTGCTACTATCCTCGGCAACA
species | Oryza sativa |
transcript | LOC_Os03g04140.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAG GGTGTTACACTTGGTGGTEST: gi|58693702|gb|CK082389.1|CK082389
genomic: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAGgtgcccagca ... tttcctacagGGTGTTACACTTGGTGGT
EST: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAG GGTGTTACACTTGGTGGTACTGGCAACGAAAATGGAGATAGACACCCCAAGEST: gi|86492726|gb|CI135359.1|CI135359
genomic: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAGgtgcccagca ... tttcctacagGGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAG
EST: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAG GGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAGEST: gi|29681231|gb|CB677506.1|CB677506
genomic: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAGgtgcccagca ... tttcctacagGGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAG
EST: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAG GGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAGEST: gi|38480201|gb|CF964290.1|CF964290
genomic: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAGgtgcccagca ... tttcctacagGGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAG
EST: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAG GGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAG
genomic: TAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAGgtgcccagca ... tttcctacagGGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAG
tgacttcgatatggatgatattgtttggataccgaaactcagacttttcctacagGGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAGATTGGTCAGGGGGCTCTTCTTGGAGCTGGTGCTACTATCCTCGGCAACA
cttttcctac CT-rich tract
atattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatatatacactacaatgtgccgagataggtttataacaacaatgacttcgatatggatgatattgtttggataccgaaactcagacttttcctacagGGTGTTACACTTGGTGGTACTGGCAAGGAAAATGGAGATAGACACCCCAAGATTGGTCAGGGGGCTCTTCTTGGAGCTGGTGCTACTATCCTCGGCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - aatgtgc
- - - - - - - - - - - - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accgaaa