Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgattttctctaaattttggagtgcaatactgcaagaaatagtcacattaatatttttttgaaattcttttcgagttggagtcggttggtttgccctcattaagcaatgccaatatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGG

Basic information

species Oryza sativa
transcript LOC_Os03g03920.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03920.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G127101_T01 (Zea mays), 3'ss of exon 7
gtaagtgattttctctaaattttggagtgcaatactgcaagaaatagtcacattaa-tatttttttgaaattcttttcgagttggag--tcggttggtttgccctcattaa----gcaatgccaatatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGG
|| ||| |  |  |||    | | || ||||  | |  |      | |  || | | |||  | |    |  ||||||   || ||   |   |||   |   ||||| ||    | |||| ||| ||||||||  || |||||||| || || || |||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||   ||||| || ||
gttagt-acatagtctgttctgttga-tgcagaaattaatcctgcatttccactgagtatgatctcatgaagcttttctctttagatgtttttttgaagttttctcatcaacaaagtaatgtcaaaatttgcagCACCGCCAGAAGAACTGTACGCCACACAATTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAAGAGAACATCCGAGCCTTGGCCGCTACCGCTGG

upper sequence: LOC_Os03g03920.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G057158_T01 (Zea mays), 3'ss of exon 7
gtaagtgattttctctaaattttgg-agtgcaatactgcaagaaatagtcacattaa---tatttttttgaaa---ttcttttcgagttggagtcggttggtttgccctcattaa----gcaatgccaatatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGG
|| |||  |      |   || ||  | || || |    |      | |  || |||   || | | |||||    |||| || |  |     |   |||   |   ||||| ||    | |||| ||| ||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||   || || || ||
gttagtagtacatagtctgttctgttaatgaaaaaaataatcctgcatttccactaagtataatctcttgaagcttttctctttggatgttttttttttgaggttttctcatcaacaaagtaatgtcaaaatttgcagTGCCACCAGAAGAACTGTATGCAACACAATTAGCTCAGCTCCAAGAAATGGGTTTTTTTGACACACAGGAGAACATCCGAGCCTTGGCCGCCACTGCTGG

upper sequence: LOC_Os03g03920.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GLYMA16G22530.1 (Glycine max), 3'ss of exon 8
gtaagtgattttctctaaattttggagtgcaatactgcaagaaatagtcacattaatatttttttgaaattcttttcgagttggagtcggttggtttgccctcattaagcaatgccaatatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGG
                 |||     |        |  ||| | ||||  || |   |||| |||  |  |   |||     |    || |        | |||| | | |  ||    | ||  |||  || |||||  |||| |||||  | |||||  | ||||| ||||| ||||| |||||||||||||| ||||||||| ||||| | || || ||  | ||
----------------gaatggacaaaaaatgccccccaaaacatagggacctaggtattattt--acctaaattttatactctgctcagc-------ctctcactga-ctttgttg-tcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATTAGAGCTCTTATCGCCACTTCAGG

upper sequence: LOC_Os03g03920.4 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv04s0210g00220.t01 (Vitis vinifera), 3'ss of exon 7
gtaagtgattttctctaaattttggagtgcaatactgcaagaaatagtcacattaatatttttttgaaattcttttcgagttggagtcggttggtttgccctcattaagcaatgccaatatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGG
                                        |  || |     ||  | | | |   |  |  || |  | |   | |    || ||  |   |  |   | ||     |  || |||| ||||| ||| |  | ||||| || || ||  | ||||| |||||||||||||||||||||||||||||||| || || ||| ||| ||| || || ||
----------------------------------------gttattgctctctttctctctctcacatgtgtttatttact--aattattctgattctcaacctgtgttccattttg-ttcttccagTACCACCGGAACAATTGTATGCTACTCAGCTGTCGCAGCTTCAAGAAATGGGTTTCTTTGACACACAGGAGAATATACGGGCTCTGACTGCCACTGCAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55436836|gb|CV731582.1|CV731582
EST:     TGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: TGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|29672914|gb|CB669189.1|CB669189
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86415426|gb|CI069829.1|CI069829
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88955460|gb|CI091552.1|CI091552
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|89176589|gb|CI111305.1|CI111305
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86483446|gb|CI126079.1|CI126079
EST:     GTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: GTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88978796|gb|CI385137.1|CI385137
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88955489|gb|CI091581.1|CI091581
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88849094|gb|CI087616.1|CI087616
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTGGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86844055|gb|CI336736.1|CI336736
EST:     CAGTGGGCTCGCTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACAAAAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86837742|gb|CI343221.1|CI343221
EST:     TTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: TTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88242999|gb|CI244121.1|CI244121
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88844161|gb|CI001218.1|CI001218
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88228003|gb|CI227483.1|CI227483
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88487667|gb|CI424938.1|CI424938
EST:     GTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: GTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86428136|gb|CI073233.1|CI073233
EST:     CCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86482742|gb|CI125375.1|CI125375
EST:     CAGTGGGCTCGGTGCTGGTGTTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|157650080|gb|EX449714.1|EX449714
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|87020032|gb|CI277764.1|CI277764
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88515956|gb|CI443610.1|CI443610
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86496854|gb|CI139487.1|CI139487
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         GTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|89166526|gb|CI103812.1|CI103812
EST:     TGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: TGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86500583|gb|CI143216.1|CI143216
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|163923026|gb|EG712773.1|EG712773
EST:     CTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86429591|gb|CI076272.1|CI076272
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|13420871|gb|AU174961.1|AU174961
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86488456|gb|CI131089.1|CI131089
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88997507|gb|CI390173.1|CI390173
EST:     TGGTGGTGGCCTA-GTGTTCCTAGTGCACCC-ATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: TGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|89178208|gb|CI391387.1|CI391387
EST:     GGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: GGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86602877|gb|CI357241.1|CI357241
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88255912|gb|CI354736.1|CI354736
EST:     AGTGGGCTCGGTGGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: AGTGGGCTCGGT-GCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|88850993|gb|CI096383.1|CI096383
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86413823|gb|CI068030.1|CI068030
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
EST: gi|86486868|gb|CI129501.1|CI129501
EST:     CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATG                         TTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG
genomic: CAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 70 (downstream exon)
Score: 33

GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGTTCCTAGTGCACCCAATGgtaagtgatt ... atatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcgagttggagtcggttggtttgccctcattaagcaatgccaatatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGG
                                            aatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgattttctctaaattttggagtgcaatactgcaagaaatagtcacattaatatttttttgaaattcttttcgagttggagtcggttggtttgccctcattaagcaatgccaatatttgcagTTCCACCAGAAGAGCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACACACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT