1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgttctactcacttatgaactttttgatttcttccatttactaaacagtatagttaactcattttctgattgcaattgttcatcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGAC
species | Oryza sativa |
transcript | LOC_Os03g03410.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATCAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|86506665|gb|CI149298.1|CI149298
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|313080728|gb|HO213525.1|HO213525
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|58684248|gb|CK072935.1|CK072935
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|86415326|gb|CI069729.1|CI069729
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|88286626|gb|CI517737.1|CI517737
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TAATTCACATGCTCGGAATGGATGATCTACTATNCCGCGAT GATAAGAAACCCGGGAGANATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|86538906|gb|CI179112.1|CI179112
genomic: TAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACAGGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|22305590|gb|BQ906812.1|BQ906812
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAATCCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCEST: gi|18387807|gb|BM421005.1|BM421005
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAA-CCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTC
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|29631790|gb|CB636799.1|CB636799
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|89186213|gb|CI048082.1|CI048082
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|396941393|gb|HO188602.1|HO188602
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|16579523|gb|BI813618.1|BI813618
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTAT-CCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|88850623|gb|CI094888.1|CI094888
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATGTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTTCEST: gi|86886526|gb|CI322758.1|CI322758
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGC-TC
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|88502100|gb|CI429606.1|CI429606
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: -GGACATGTANATTCACATGGTCGAAATGGATGATTTAGTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGGTCAEST: gi|86496376|gb|CI139009.1|CI139009
genomic: GGGACATGTA-ATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|88297933|gb|CI555948.1|CI555948
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: GGGACATGTAATTCACATGCTCGAAATGGATGATTTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|86504484|gb|CI147117.1|CI147117
genomic: GGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGTTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|87040135|gb|CI193344.1|CI193344
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|89181781|gb|CI113287.1|CI113287
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|88366355|gb|CI553753.1|CI553753
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|88276692|gb|CI397494.1|CI397494
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|88847943|gb|CI006129.1|CI006129
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|58694780|gb|CK083467.1|CK083467
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|29677567|gb|CB673842.1|CB673842
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|88367972|gb|CI561560.1|CI561560
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|86426016|gb|CI071113.1|CI071113
genomic: TACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|87017975|gb|CI275789.1|CI275789
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|86828213|gb|CI276818.1|CI276818
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAEST: gi|86435568|gb|CI106801.1|CI106801
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAAACACAGCTCAEST: gi|88975171|gb|CI023422.1|CI023422
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
EST: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGAT GATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
genomic: TGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttcta ... catcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCA
atttactaaacagtatagttaactcattttctgattgcaattgttcatcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGAC
tatagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctactcacttatgaactttttgatttcttccatttactaaacagtatagttaactcattttctgattgcaattgttcatcatacagGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG