Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgaacaccactcacctttgttcattagcatgtcataatataccccaaaaaaaaagtatcccatccttgtctcgtttcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTGAGCATGAATACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATG

Basic information

species Oryza sativa
transcript LOC_Os03g02680.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02680.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G143213_T02 (Zea mays), 3'ss of exon 8
gtaagtcgaacaccactcacctt-tgttcattagcatgtcataatataccccaaaaaaaaagtatcccatccttgtctcgtttcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTGAGCATGAATACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATG-
||||||| ||      ||   |  || |||| | |    ||| |||||   |        | |       ||| || ||  |   ||| |||||||||||| |||| ||||||| |||||| ||||||||||| || || |||||||| || |||||||||||||||||||||||||| ||||| |||||   
gtaagtcaaatggatttctgttgatgatcatgaccgctgcatcatatatatcctctctgtattgaattcacct-gtttccgtctgctgacagAAAATGCTTAGGTATGAGCCAAGCAAAAGAATCACAGCTAGGCAAGCACTTGAGCACGAGTACTTCAAGGACCTTGAGATGGTACAGTGACC-TGCTAAAT

upper sequence: LOC_Os03g02680.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G008327_T01 (Zea mays), 3'ss of exon 7
gtaagtcgaacaccactcacctt-tgttcattagcatgtcataatataccccaaaaaaaaagtatcccatccttgtctcgtttcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTGAGCATGAATACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATG-
||||||| ||      || |||  || ||||        | | ||| | |||  | |  |   |   ||  | | | ||  ||  ||| |||||||||||||| |||||||||| |||||| |||||||| || || || ||||||||||| |||||||||||||||||  ||||||| ||||| |||||   
gtaagtcaaatggatttctcctgatgatcatggctgctgcttcatacatccctcacagtattgaattca--cctatttctgtttgctgacagAAAATGCTTCGATACGAGCCAAGCAAAAGAATCACAGCGAGGCAAGCACTTGAGCATGAGTACTTCAAGGACCTTGAAGTGGTACAGTGACC-TGCTAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88383054|gb|CI538082.1|CI538082
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88490176|gb|CI427448.1|CI427448
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86870748|gb|CI323624.1|CI323624
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88548596|gb|CI476408.1|CI476408
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88527790|gb|CI455974.1|CI455974
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|29658305|gb|CB654580.1|CB654580
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88529647|gb|CI457983.1|CI457983
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86499530|gb|CI142163.1|CI142163
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86418763|gb|CI053564.1|CI053564
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88906182|gb|CI375254.1|CI375254
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88512022|gb|CI439528.1|CI439528
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88524547|gb|CI450545.1|CI450545
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86534822|gb|CI175028.1|CI175028
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88528846|gb|CI457117.1|CI457117
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88464380|gb|CI544841.1|CI544841
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86540731|gb|CI180937.1|CI180937
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|87029121|gb|CI276389.1|CI276389
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACCAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|89183309|gb|CI045874.1|CI045874
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88527981|gb|CI456181.1|CI456181
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88220434|gb|CI219994.1|CI219994
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCCCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|2317540|gb|C22594.1|C22594
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88502975|gb|CI430481.1|CI430481
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|2317539|gb|C22593.1|C22593
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|218491447|gb|FG947046.1|FG947046
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTA
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTA
EST: gi|88263363|gb|CI367137.1|CI367137
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTGT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|29688121|gb|CB684396.1|CB684396
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88975335|gb|CI023586.1|CI023586
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|33805593|gb|CF328672.1|CF328672
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86537872|gb|CI178078.1|CI178078
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|2317531|gb|C22585.1|C22585
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGGCTTCGGTACGAGCCAAACAAAAGGATCCACAGCTAGACAGGCTC
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAAT-GCTTCGGTACGAGCCAAACAAAAGGAT-CACAGCTAGACAGGCTC
EST: gi|88515177|gb|CI442831.1|CI442831
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88266185|gb|CI377087.1|CI377087
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGGTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88538516|gb|CI467554.1|CI467554
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88218941|gb|CI220353.1|CI220353
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88536105|gb|CI465829.1|CI465829
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|58664154|gb|CK052840.1|CK052840
EST:     TTGCAAGTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88527288|gb|CI455431.1|CI455431
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|87021528|gb|CI274135.1|CI274135
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86539207|gb|CI179413.1|CI179413
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86501713|gb|CI144346.1|CI144346
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86541116|gb|CI181322.1|CI181322
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCATACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86429915|gb|CI082338.1|CI082338
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|89181446|gb|CI112952.1|CI112952
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88239570|gb|CI240047.1|CI240047
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|58604550|gb|CK015078.1|CK015078
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88220311|gb|CI219871.1|CI219871
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88441936|gb|CI557589.1|CI557589
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88834148|gb|CI000512.1|CI000512
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88531994|gb|CI461448.1|CI461448
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|8860073|gb|AU097391.1|AU097391
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88476138|gb|CI413409.1|CI413409
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88484741|gb|CI422012.1|CI422012
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcataatataccccaaaaaaaaagtatcccatccttgtctcgtttcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTGAGCATGAATACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATG
                                tccttgtctcgtttc  CT-rich tract
               aaaaaaaaagtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtaagtcgaacaccactcacctttgttcattagcatgtcataatataccccaaaaaaaaagtatcccatccttgtctcgtttcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTTGAGCATGAATACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG