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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtgagggaaatattttgcatcactatctatctaatgatacagaaacggatattgtagtctgttcagttcattataaaacagtgaaagtacaaactggaatcagttttcacctctataacagcttacagctgcacaatactgtttcacaaaactaatggacaaatgttttggaaaagGCAAGGGGTCAGATACTTGGAGAAGATGGGGTGCGTGTCCACAGTATGGTTCTACCAGGCCTTGCTTCCAGCACATCAATCAACTTCTCAGGCCCTGGAG

Basic information

species Oryza sativa
transcript LOC_Os03g02570.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02570.1 (Oryza sativa), 3'ss of exon 6
lower sequence: AT5G52100.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagttgtgagggaaatattttgcatcactatctatctaatgatacagaaacggatattgtagtctgttcagttcattataaaacagtgaaagtacaaactggaatcagttttcacctctataacagcttacagctgcacaatactgtttcacaaaactaatggacaaatgttttggaaa-----agGCAAGGGGTCAGATACTTGGAGAAGATGGGGTGCGTGTCCACAGTATGGTTCTACCAGGCCTTGCTTCCAGCACATCAATCAACTTCTCAGGCCCTGGAG
                                                                                             ||| || |  |||| || || ||  | |  | ||| |||  | | |   | | | ||  ||| ||  ||  |   | | ||    | |     ||||||| |||||  || | |||||||| ||||| ||||| |||||||||||||||||||| ||  | || || |||  | || |||||||| | || ||||
---------------------------------------------------------------------------------------------gta-aagcatgaataagcttgcagatatggaccag-ttagggatcctgtaca-tattatacataaacaa-agctgagttttccacatatttccagGCAAGAGGTCAAGTAATCGGAGAAGACGGGGTTCGTGTTCACAGTATGGTTCTACCAGGACTACCATCTAGTACACAAGTCTACTTCTCAAGTCCAGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttacagctgcacaatactgtttcacaaaactaatggacaaatgttttggaaaagGCAAGGGGTCAGATACTTGGAGAAGATGGGGTGCGTGTCCACAGTATGGTTCTACCAGGCCTTGCTTCCAGCACATCAATCAACTTCTCAGGCCCTGGAG
                            aactaat  putative branch site (score: 2)
                          aaaactaat  TA-rich tract