1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agattgtggtaggatttagctgctacatggaacagacatattcttgagtgtttttcctttagctgccgctatttcatgatctgtctacttttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAATCTTGGGAACGAAAGCATGGCAGTTGAGGGTTTTGAGGAAGCAATTAAAT
species | Oryza sativa |
transcript | LOC_Os02g55200.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGACGTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAG GTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAATEST: gi|89189931|gb|CI049470.1|CI049470
genomic: TGGACGTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAGgtgattactg ... ttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAAT
EST: AAGAACACTCAGCTGTGGCTTCCCAG GTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAATEST: gi|2427558|gb|C72021.1|C72021
genomic: AAGAACACTCAGCTGTGGCTTCCCAGgtgattactg ... ttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAAT
EST: GGACGTTCGCAGANGTGCAGTAAAAGGACCACTCAGCTGTGGCTTCCCAG GTCATTGATGTAG-AACTTCTCTTGCCAAAGTTCCGGATGTCGATAGAAAEST: gi|86597624|gb|CI274615.1|CI274615
genomic: GGACGTTCGCAGAAGTGCAGTAAAAGAAC-ACTCAGCTGTGGCTTCCCAGgtgattactg ... ttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAA
EST: GTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAG GTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAATEST: gi|58589478|gb|CF987786.1|CF987786
genomic: GTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAGgtgattactg ... ttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAAT
EST: TGGGCGTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAG GTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAATEST: gi|29659820|gb|CB656095.1|CB656095
genomic: TGGACGTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAGgtgattactg ... ttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAAT
EST: TGGACGTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAG GTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAATEST: gi|9865344|gb|AU101094.1|AU101094
genomic: TGGACGTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAGgtgattactg ... ttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAAT
EST: TGGACGTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAG GTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAAT
genomic: TGGACGTTCGCAGAAGTGCAGTAAAAGAACACTCAGCTGTGGCTTCCCAGgtgattactg ... ttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAAT
gagtgtttttcctttagctgccgctatttcatgatctgtctacttttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAATCTTGGGAACGAAAGCATGGCAGTTGAGGGTTTTGAGGAAGCAATTAAAT
tctactttt CT-rich tract
tatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattgtggtaggatttagctgctacatggaacagacatattcttgagtgtttttcctttagctgccgctatttcatgatctgtctacttttggatatagGTCATTGATGTAGCAACTTCTCTTGCCAAAGTTGCGGATGTCGATAGAAATCTTGGGAACGAAAGCATGGCAGTTGAGGGTTTTGAGGAAGCAATTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - gctgcta
- - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg