1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttctaggccctttttatggaaatgtgatttatcttatggcctgatgtccctcacgaatctagtttgaggtactgacttatctttaaatgtcaaatgtagATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCTAGCATTGCTG
species | Oryza sativa |
transcript | LOC_Os02g55140.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACACTTGCTGATGCTTTGGTGTACGCTTGTAATCCAAG-TGTTGACCAG ATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGEST: gi|29672989|gb|CB669264.1|CB669264
genomic: TACACTTGCTGATGCTTTGGTGTACGCTTGTAATC-AAGGTGTTGACAAGgtaatgactt ... tcaaatgtagATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTG
EST: TTACACTTGTTGATGCTTTGGTGTACGCTTGTAATCAAGGTGTTGACAAG ATTATAGATCTGGCAACACTTACTGGTGCATCAGTCGTTGCACTTGGGCGTEST: gi|29640124|gb|CB645133.1|CB645133
genomic: TTACACTTGCTGATGCTTTGGTGTACGCTTGTAATCAAGGTGTTGACAAGgtaatgactt ... tcaaatgtagATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCT
EST: TTACACTTGCTGATGCTTTGGTGTACGCTTGTAATCAAGGTGTTGACAAG ATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCTEST: gi|38479008|gb|CF963141.1|CF963141
genomic: TTACACTTGCTGATGCTTTGGTGTACGCTTGTAATCAAGGTGTTGACAAGgtaatgactt ... tcaaatgtagATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCT
EST: TTACACTTGCTGATGCTTTGGTGTACGCTTGTAATCAAGGTGTTGACAAG ATTATCGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCTEST: gi|27546467|gb|CA764586.2|CA764586
genomic: TTACACTTGCTGATGCTTTGGTGTACGCTTGTAATCAAGGTGTTGACAAGgtaatgactt ... tcaaatgtagATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCT
EST: TTACACTTGCTGATGCTTTGGTGTACGCTTGTAATCAAGGTGTTGACAAG ATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCT
genomic: TTACACTTGCTGATGCTTTGGTGTACGCTTGTAATCAAGGTGTTGACAAGgtaatgactt ... tcaaatgtagATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCT
tgtccctcacgaatctagtttgaggtactgacttatctttaaatgtcaaatgtagATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCTAGCATTGCTG
tactgac putative branch site (score: 94)
acttatctttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctaggccctttttatggaaatgtgatttatcttatggcctgatgtccctcacgaatctagtttgaggtactgacttatctttaaatgtcaaatgtagATTATTGATCTGGCAACACTTACTGGTGCATGTGTCGTTGCACTTGGGCCTAGCATTGCTG
- - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - tcttatg
- - - - - - - - - - - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtactg