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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttactactttatctgccttgatatttcagcctcttatttctgacgttaaaaaacttatgggatggatgtaatatgcaactaagacatattacctttctactatgtgctaaagAGGGATCATTCTGCTTAAGCGACTCAGCCAACTACCGGCTCTGTCTGCATGGTTTTGTTCTGCACTCTTCATTCCTCGAGCGTGTTGCCTGCTTCATGTG

Basic information

species Oryza sativa
transcript LOC_Os02g54770.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g54770.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G080930_T03 (Zea mays), 3'ss of exon 6
gtttactactttatctgccttgatatttcagcctcttatttctgacgttaaaaaacttatgggatggatgtaatatgcaactaagacatattacctttctactatgtgctaaagAGGGATCATTCTGCTTAAGCGACTCAGCCAACTACCGGCTCT------GTCTGCATGGTTTTGTTCTGCACTCTTCATTCCTCGAGCGTG-TTGCCTGCTT-CATGTG--
|||||  || ||||||  ||| || | | |    |||  || || | ||| | ||||||     |||||||| ||||| ||||||||||||||||||||| || |||  | || ||| ||  |||||||||| |||||| ||||||||| ||||||      |||| |||||||||||||      || ||||| | |  |||  ||  ||||   ||  ||  
gtttaaaaccttatctagcttaat-tgtgattgccttgattatgccattatagaacttaatatttggatgtattatgcgactaagacatattacctttcttctctgt--tgaaaagGCAT-GTTCTGCTTAAACGACTCGGCCAACTAC-GGCTCTCAGTTAGTCTTCATGGTTTTGTTC------CTCCATTCTTGGCACGTCCTTATCTGCAAACAAATGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggatggatgtaatatgcaactaagacatattacctttctactatgtgctaaagAGGGATCATTCTGCTTAAGCGACTCAGCCAACTACCGGCTCTGTCTGCATGGTTTTGTTCTGCACTCTTCATTCCTCGAGCGTGTTGCCTGCTTCATGTG
        atgtaatat  TA-rich tract