1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaattaatgcaaagttattcttcaagtcctgttaccaagagctaggcattccatctaagttgtggtttgtcatactgatttatcatctttttttttccagCTTAGGAGCAAGATCGCTTCTGCAACATCAGCTATTAAATCAGTTTTTGGACAAGAAGTTCAACAGCAGGATGCA
species | Oryza sativa |
transcript | LOC_Os02g51100.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATTATCCTTGCCAGATTTCCTGGATGCATCTATTGGGAAGATCTTGAAG CTTAGGAGCAAGATCGCTTCTGCAACATCAGCTATEST: gi|218500003|gb|FG951343.1|FG951343
genomic: TATTATCCTTGCCAGATTTCCTGGATGCATCTATTGGGAAGATCTTGAAGgtattatttg ... ttttttccagCTTAGGAGCAAGATCGCTTCTGCAACATCAGCTAT
EST: TATTATCCTTGCCAGATTTCCTGGATGCATCTATTGGGAAGATCTTGAAG CTTAGGAGCAAGATCGCTTCTGCAACATCAGCTATTAAATCAGTTTTTGGA
genomic: TATTATCCTTGCCAGATTTCCTGGATGCATCTATTGGGAAGATCTTGAAGgtattatttg ... ttttttccagCTTAGGAGCAAGATCGCTTCTGCAACATCAGCTATTAAATCAGTTTTTGGA
gcattccatctaagttgtggtttgtcatactgatttatcatctttttttttccagCTTAGGAGCAAGATCGCTTCTGCAACATCAGCTATTAAATCAGTTTTTGGACAAGAAGTTCAACAGCAGGATGCA
tactgat putative branch site (score: 33)
tttatcatcttttttt CT-rich tract
tgatttatcatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattaatgcaaagttattcttcaagtcctgttaccaagagctaggcattccatctaagttgtggtttgtcatactgatttatcatctttttttttccagCTTAGGAGCAAGATCGCTTCTGCAACATCAGCTATTAAATCAGTTTTTGGACAAGAAGTTCAACAGCAGGATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - taatgca
- - - - - - - - - - - - - - - - -accaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catactg