1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgggaagatgaagtgccgaactcagccttaatctgcatatgaactgtctgggtttatcctttttaaaattttcttaattctttgttgatgggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAAACGCTATTACTAATGCTGTTGAGATATTCAATACTACCAG
species | Oryza sativa |
transcript | LOC_Os02g48964.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAG CACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAEST: gi|218482945|gb|FG948107.1|FG948107
genomic: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGgtaaattatt ... ggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAA
EST: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAG CACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAEST: gi|218501212|gb|FG955432.1|FG955432
genomic: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGgtaaattatt ... ggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAA
EST: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAG CACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAEST: gi|27548190|gb|CA766256.2|CA766256
genomic: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGgtaaattatt ... ggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAA
EST: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAG CACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAEST: gi|218504711|gb|FG953266.1|FG953266
genomic: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGgtaaattatt ... ggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAA
EST: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAG CACCTTGATCGAGAAAGAATTAGCTTTTGCTGTCGAACTACATATGATGAAEST: gi|29619648|gb|CB624660.1|CB624660
genomic: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGgtaaattatt ... ggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAA
EST: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAG CACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAEST: gi|29672638|gb|CB668913.1|CB668913
genomic: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGgtaaattatt ... ggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAA
EST: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAG CACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAA
genomic: AGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGCTAATCTGCAAGgtaaattatt ... ggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAA
gtctgggtttatcctttttaaaattttcttaattctttgttgatgggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAAACGCTATTACTAATGCTGTTGAGATATTCAATACTACCAG
tttatcctttttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggaagatgaagtgccgaactcagccttaatctgcatatgaactgtctgggtttatcctttttaaaattttcttaattctttgttgatgggaaatgcagCACCTTGATCGAGAAGGAATTAGCTTTTGCTGTCGAACTACATATGATGAAAACGCTATTACTAATGCTGTTGAGATATTCAATACTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - -agtgccg
- - - - - - - - - - - - - - - atctgca
- - - - - - - - - - - - - - - - - - - - - - tgtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg