1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtttctagtgcatcacaatatgtcaggacatcttgttctgatctttttgttcgttttcatcaatttagtttttttttgttaattatatacttgcagTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGC
species | Oryza sativa |
transcript | LOC_Os02g48400.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTAC TTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCEST: gi|86873591|gb|CI329969.1|CI329969
genomic: CAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACgtaagtttct ... atacttgcagTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGC
EST: CAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTAC TTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGC
genomic: CAATGCACATAAAAGATGAAGGCGCAAGCTAACAGATAGACAGTGGTTACgtaagtttct ... atacttgcagTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGC
tctttttgttcgttttcatcaatttagtttttttttgttaattatatacttgcagTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGC
tgttaat putative branch site (score: 3)
ttttcatcaatttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctagtgcatcacaatatgtcaggacatcttgttctgatctttttgttcgttttcatcaatttagtttttttttgttaattatatacttgcagTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTCATTTGGCTGATGGAAAATCTTTTGGAGGCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG