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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctgtctggactgctgttatcttttcttgtgattatctggtagtaactgttctttttctgtccctaatagGTACCCTTAGATTGCAGCAGGACAAAAGAGCAGTGCTGCTGTATTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG

Basic information

species Oryza sativa
transcript LOC_Os02g48340.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29645024|gb|CB650031.1|CB650031
EST:     TCAGACCAAAGAGCAAGCTGAACTATGCTGCCAAACATTTGTACCTTGAG                         GTACCCTTAGATTGCAGCAGGACAAAAGAGCAGTGCTGCTGTATTTGTAGT
genomic: TCAGACCAAAGAGCAAGCTGAACTATGCTGCCAAACATTTGTACCTTGAGgtttgttctg ... tccctaatagGTACCCTTAGATTGCAGCAGGACAAAAGAGCAGTGCTGCTGTATTTGTAGT
EST: gi|58674908|gb|CK063595.1|CK063595
EST:     GCTGAACTATGCTGCCAAACATTTGTACCTTGAG                         GTACCCTTAGATTGCAGCAGGACGAAAGAGCAGTGCTGCTGTATTTGTAGT
genomic: GCTGAACTATGCTGCCAAACATTTGTACCTTGAGgtttgttctg ... tccctaatagGTACCCTTAGATTGCAGCAGGACAAAAGAGCAGTGCTGCTGTATTTGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatcttttcttgtgattatctggtagtaactgttctttttctgtccctaatagGTACCCTTAGATTGCAGCAGGACAAAAGAGCAGTGCTGCTGTATTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG
                         tagtaac  putative branch site (score: 1)
                               ctgttctttttctgtc  CT-rich tract
                                  ttcttttt  TA-rich tract