1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttcatttgctaaaccccaattcgtgttgctattaatgatcagacaactcttctatcactgtagtatataacttatttgttcatgtttttaaaagtagcttttttgtggcagAACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTTGAGCTCAGCATGAGACAACCGCTGTGCATTCTTGGAGATTGACCTGTGA
species | Oryza sativa |
transcript | LOC_Os02g48100.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTT AACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTTEST: gi|88541778|gb|CI471068.1|CI471068
genomic: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTTgtaagttcat ... tttgtggcagAACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTT
EST: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTT AACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTTEST: gi|86594985|gb|CI258239.1|CI258239
genomic: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTTgtaagttcat ... tttgtggcagAACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTT
EST: GACTGGAGATTGATGCCAGTATTCTACAAGAAGCTCATCTTGCTGCACTT AACGTTTTGGGAACAAGCAACGACCTTGCACCATTTCCAGGACTAAAAGTTEST: gi|29688675|gb|CB684950.1|CB684950
genomic: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTTgtaagttcat ... tttgtggcagAACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTT
EST: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTT AACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTTEST: gi|86254914|gb|CI017034.1|CI017034
genomic: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTTgtaagttcat ... tttgtggcagAACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTT
EST: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTT AACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTT
genomic: GACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTTgtaagttcat ... tttgtggcagAACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTT
actgtagtatataacttatttgttcatgtttttaaaagtagcttttttgtggcagAACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTTGAGCTCAGCATGAGACAACCGCTGTGCATTCTTGGAGATTGACCTGTGA
atataac putative branch site (score: 13)
cttttttgt putative PPT
tatataacttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcatttgctaaaccccaattcgtgttgctattaatgatcagacaactcttctatcactgtagtatataacttatttgttcatgtttttaaaagtagcttttttgtggcagAACGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTTGAGCTCAGCATGAGACAACCGCTGTGCATTCTTGGAGATTGACCTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT