1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtcagtagcccaacacaagaaagaaataatggtattctgtaccaagtgattatgatctaatggcttgagttcttacacatgatcatttgatgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACCGCCACTTCAGGGACATCAAGGAAATCCCCCCTCACCGCCTTCAAGAGA
species | Oryza sativa |
transcript | LOC_Os02g47600.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACEST: gi|163925750|gb|EG714586.1|EG714586
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACEST: gi|163926919|gb|EG715144.1|EG715144
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACEST: gi|58601442|gb|CK011970.1|CK011970
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACEST: gi|8404630|gb|AU091984.1|AU091984
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACEST: gi|16753343|gb|BM037722.1|BM037722
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
EST: CCTATGATTTGATCAG GGTGAGAAAGATGACAAGATCATACCTGTTTGTGCTGATGACCCTGAATAEST: gi|15852955|gb|BI805751.1|BI805751
genomic: CCTATGA-TTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATA
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACEST: gi|58689221|gb|CK077908.1|CK077908
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACEST: gi|163928605|gb|EG710890.1|EG710890
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTCGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAEST: gi|58688425|gb|CK077112.1|CK077112
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGT-GAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATA
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACEST: gi|58596788|gb|CK007316.1|CK007316
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
EST: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAG GGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
genomic: GATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGgttaaatccc ... atgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATAC
agtgattatgatctaatggcttgagttcttacacatgatcatttgatgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACCGCCACTTCAGGGACATCAAGGAAATCCCCCCTCACCGCCTTCAAGAGA
ttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcagtagcccaacacaagaaagaaataatggtattctgtaccaagtgattatgatctaatggcttgagttcttacacatgatcatttgatgcaaacagGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACCGCCACTTCAGGGACATCAAGGAAATCCCCCCTCACCGCCTTCAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -cagtagc
- - - - - - - - caagaaa
- - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - -ctgtacc
- - - - - - - - - - - - - - - - - - - - - - - - - ttatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgat