1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttgtattgcactgcagagctctcatctgatgtattgcacctaaagacacatgcatgtgggcgtgcatttatgggctaacggatgcatttaccctgtagGTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTCTACCGTCCACTCCTTCGGTCTGGTCTCGCCTTTGGCGCCAGGCGTTGGC
species | Oryza sativa |
transcript | LOC_Os02g45250.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGTACCTTCCGGCTGTGTGATGCAAGACACTCCCAATGGGTATTGCAAG GTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTCEST: gi|7273764|gb|AU062749.2|AU062749
genomic: GGGTACCTTCCGGCTGTGTGATGCAAGACACTCCCAATGGGTATTGCAAGgtaacaacta ... taccctgtagGTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTC
EST: CTTCCGGCTGTGTGATGCAAGACACTCCCAATGGGTATTGCAAG GTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTCEST: gi|58598705|gb|CK009233.1|CK009233
genomic: CTTCCGGCTGTGTGATGCAAGACACTCCCAATGGGTATTGCAAGgtaacaacta ... taccctgtagGTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTC
EST: GGGTACCTTCCGGCTGTGTGATGCAAGACACTCCCAATGGGTATTGCAAG GTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTC
genomic: GGGTACCTTCCGGCTGTGTGATGCAAGACACTCCCAATGGGTATTGCAAGgtaacaacta ... taccctgtagGTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTC
agacacatgcatgtgggcgtgcatttatgggctaacggatgcatttaccctgtagGTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTCTACCGTCCACTCCTTCGGTCTGGTCTCGCCTTTGGCGCCAGGCGTTGGC
ggctaac putative branch site (score: 11)
tttaccct putative PPT
atttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgtattgcactgcagagctctcatctgatgtattgcacctaaagacacatgcatgtgggcgtgcatttatgggctaacggatgcatttaccctgtagGTCACATGGGTTGAGCATACGGAATACGATGAGGCATCAGTGCACCAGCTCTACCGTCCACTCCTTCGGTCTGGTCTCGCCTTTGGCGCCAGGCGTTGGC
- -tgtattg
- - - - - cactgca
- - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - -ttgcacc
- - - - - - - - - - - - - - - - - - - - - -aaagacac
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgca