1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgctcctgctgtgtattcttcttcccctagattattttgtcctcaaactagatgctaaccatttacgtaccatttaccctttttctttgtttgctcagATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCA
species | Oryza sativa |
transcript | LOC_Os02g45110.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGG ATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTEST: gi|29668321|gb|CB664596.1|CB664596
genomic: AGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGGgtatgctcct ... gtttgctcagATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTT
EST: AGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGG ATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGEST: gi|87039297|gb|CI193919.1|CI193919
genomic: AGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGGgtatgctcct ... gtttgctcagATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGG
EST: AGGACAAGGAAGCTGGAACTGTGTGCAAGAATGCATAATGCACATGCTGG ATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGEST: gi|86499970|gb|CI142603.1|CI142603
genomic: AGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGGgtatgctcct ... gtttgctcagATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGG
EST: AGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGG ATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGG
genomic: AGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGGgtatgctcct ... gtttgctcagATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGG
caaactagatgctaaccatttacgtaccatttaccctttttctttgtttgctcagATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCA
tgctaac putative branch site (score: 28)
ccatttaccctttttc putative PPT
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcctgctgtgtattcttcttcccctagattattttgtcctcaaactagatgctaaccatttacgtaccatttaccctttttctttgtttgctcagATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA