1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacatgattgattaagcttcagaatctcttgtagccgacaggctagctaataatcagaaattcagaaccagtactgtgaggctaataatcacaagctgtgtgtggtgaaatgtttgatttcagGGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACGATGGAGCATGACCTGAGGAATAGGGGGCTTTGCTTGGTGCCTGTCTCGT
species | Oryza sativa |
transcript | LOC_Os02g45010.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCTAAGTGAGCCGTACACGAACTCCAGCAGGAGCAACAAGCAG GGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACGEST: gi|89166831|gb|CI104117.1|CI104117
genomic: TTGCTAAGTGAGCCGTACACGAACTCCAGCAGGAGCAACAAGCAGgtacatgatt ... ttgatttcagGGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACG
EST: TTGCTAAGTGAGCCGTACACGAACTCCAGCAGGAGCAACAAGCAG GGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACGEST: gi|87026201|gb|CI278325.1|CI278325
genomic: TTGCTAAGTGAGCCGTACACGAACTCCAGCAGGAGCAACAAGCAGgtacatgatt ... ttgatttcagGGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACG
EST: TACAGTTGCTAAGTGAGCCGTACACGAACTCCAGCAGGAGCAACAAGCAG GGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACG
genomic: TACAGTTGCTAAGTGAGCCGTACACGAACTCCAGCAGGAGCAACAAGCAGgtacatgatt ... ttgatttcagGGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACG
cagtactgtgaggctaataatcacaagctgtgtgtggtgaaatgtttgatttcagGGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACGATGGAGCATGACCTGAGGAATAGGGGGCTTTGCTTGGTGCCTGTCTCGT
taataatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgattgattaagcttcagaatctcttgtagccgacaggctagctaataatcagaaattcagaaccagtactgtgaggctaataatcacaagctgtgtgtggtgaaatgtttgatttcagGGTAACAGCGTTCCATGGGGAGATCAAGCAGAAGCGAGCAAGGGAGAGACGATGGAGCATGACCTGAGGAATAGGGGGCTTTGCTTGGTGCCTGTCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA