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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtactatgttggaaacttgtatgacgctgaccaaacttatgtgcaaaggactcatgttttgcactgtactacatgcagATGCTGAAGAATGCAAGCATTGAAGAGGTAATGCAACTGATCCTAAAGGCATCTCTCATTTTATCAGGGAACTACACCTAAATAATATCACAATAAATAT

Basic information

species Oryza sativa
transcript LOC_Os02g43594.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g43594.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G171406_T06 (Zea mays), 3'ss of exon 5
--------gtgagagtact--------atgttggaaacttgtatgacgctgaccaaacttatgt-gcaa--------aggactcatgttttgcactgtactacatgcagATGCTGAAGAATGCAAGCATTGAAGAGGTAATGCAACTGATCCTAAAGGCATCTCTCATTTTATCAGGGAACTACACCTAAATAATATCACAATAAATAT
        |||  ||  ||        ||||  | |||||||    | || |  ||  ||  || | ||             || | | ||   | |||||   | ||||||||||||||||||||| ||||||||                                                                         
gtgagactgtggcagctctcttctgatatgtatggaacttgtgattcacttataaattttcagttgtaactcttactgttgatcgtatctttggccgtactt--ttcagATGCTGAAGAATGCAAGCCTTGAAGAG-------------------------------------------------------------------------

upper sequence: LOC_Os02g43594.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G074173_T01 (Zea mays), 3'ss of exon 6
----------------gtgagagtactatgttggaaacttgtatgacgctgaccaaacttatgtgcaaaggactcatgtt--ttgcact----gtactacatg-cagATGCTGAAGAATGCAAGCATTGAAGAGGTAATGCAACTGATCCTAAAGGCATCTCTCATTTTATCAGGGAACTACACCTAAATAATATCACAATAAATAT
                       |  |||||  | ||| |||    |||| |  ||  ||  |  ||||    |  |||   | | |      ||  ||| |  ||||||||||||||||||||||| ||||||                                                                         
gtgagactatggctgttctgttctgatatgtacggaacctgtgattcgcttataaattttcggctcaaactcttactgtcggtcgtatctttggtcgtacttttcagATGCTGAAGAATGCAAGCATCGAAGAG-------------------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgctgaccaaacttatgtgcaaaggactcatgttttgcactgtactacatgcagATGCTGAAGAATGCAAGCATTGAAGAGGTAATGCAACTGATCCTAAAGGCATCTCTCATTTTATCAGGGAACTACACCTAAATAATATCACAATAAATAT
 cgctgac  putative branch site (score: 3)
         aaacttat  TA-rich tract