1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gattggtgaatcctgaagtacagttcactccttaaagatatgaatatatgatgtaaccgaatttctgaggcatgactcacggccaacttgtttgttgcagTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTATGCAGATAGCTGCGTGATAGGGGCTCT
species | Oryza sativa |
transcript | LOC_Os02g42320.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAATCTGG TGGTGTAAGACCATTTGEST: gi|33680962|gb|CF309201.1|CF309201
genomic: CAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGgtatgctact ... tttgttgcagTGGTGTAAGACCATTTG
EST: CAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGG GEST: gi|33680962|gb|CF309201.1|CF309201
genomic: CAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGgtatgctact ... tttgttgcag-
EST: CAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGG GEST: gi|55413225|gb|CV725601.1|CV725601
genomic: CAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGgtatgctact ... tttgttgcag-
EST: CAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGG TGGTGTAAGACCATTTGGA
genomic: CAGCTTGTCCGAGAAACTGCTGCTGTTATGCAGGAGTTCACACAGTCTGGgtatgctact ... tttgttgcagTGGTGTAAGACCATTTGGA
atatgatgtaaccgaatttctgaggcatgactcacggccaacttgtttgttgcagTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTATGCAGATAGCTGCGTGATAGGGGCTCT
gactcac putative branch site (score: 2)
cttgttt putative PPT
aatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattggtgaatcctgaagtacagttcactccttaaagatatgaatatatgatgtaaccgaatttctgaggcatgactcacggccaacttgtttgttgcagTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTATGCAGATAGCTGCGTGATAGGGGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC