1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatctattgcctctaatcaatatccctctgttggcaacagcattgtgtgcttctgcatttttttaattgtttctaatgaaatcgatcatacattgaaatgcaatgctctggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTGTTGATGGTCTGGCACCAAAGACAGCTGACAGACAGTCTTCCATAGAAC
species | Oryza sativa |
transcript | LOC_Os02g40830.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAACCATTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTEST: gi|66913068|gb|CX099916.1|CX099916
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTEST: gi|29662328|gb|CB658603.1|CB658603
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTEST: gi|4714828|gb|AU055945.1|AU055945
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCAGAGAAGTANCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGGATCACAGATGATGATGCAGCTAAAGTTEST: gi|29662110|gb|CB658385.1|CB658385
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTEST: gi|13420568|gb|AU174658.1|AU174658
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTEST: gi|88730444|gb|CI754057.1|CI754057
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTEST: gi|33794775|gb|CF323267.1|CF323267
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTEST: gi|27577186|gb|CA999880.1|CA999880
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAG GTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
genomic: GAACCAGTATTGAAGATCTTGCAGAGAAGTACCCTGATATGATCATCAAGgtaaatctat ... ggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTT
aattgtttctaatgaaatcgatcatacattgaaatgcaatgctctggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTGTTGATGGTCTGGCACCAAAGACAGCTGACAGACAGTCTTCCATAGAAC
ttctaat putative branch site (score: 100)
taatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatctattgcctctaatcaatatccctctgttggcaacagcattgtgtgcttctgcatttttttaattgtttctaatgaaatcgatcatacattgaaatgcaatgctctggattgccagGTTCCTATTGATGTATTCAAGGGAATCACAGATGATGATGCAGCTAAAGTTGTTGATGGTCTGGCACCAAAGACAGCTGACAGACAGTCTTCCATAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA