1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttttctttttttcgaatagttattacctcgccgtcatgcctgattagttgttaacaagaccatactactggtcagAGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACAGTTGCTCCTGGAACAGATGAATCCATTGAGAAGTTAGTTCAGCAGCTTA
species | Oryza sativa |
transcript | LOC_Os02g39570.6 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAG AGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACAEST: gi|32948291|gb|BP184863.1|BP184863
genomic: TTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAGgttttctttt ... tactggtcagAGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACA
EST: TTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAG AGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACAEST: gi|32948361|gb|BP184933.1|BP184933
genomic: TTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAGgttttctttt ... tactggtcagAGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACA
EST: TTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAG AGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACAEST: gi|86522997|gb|CI163203.1|CI163203
genomic: TTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAGgttttctttt ... tactggtcagAGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACA
EST: TCGCAGAGGCTACAATATACAG AGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACAEST: gi|33682200|gb|CF310439.1|CF310439
genomic: TCGCAGAGGCTACAATATACAGgttttctttt ... tactggtcagAGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACA
EST: TTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAG AGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACA
genomic: TTCTCAACATTGTTACAGGGGTCTTTGCTCGCAGAGGCTACAATATACAGgttttctttt ... tactggtcagAGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACA
tattacctcgccgtcatgcctgattagttgttaacaagaccatactactggtcagAGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACAGTTGCTCCTGGAACAGATGAATCCATTGAGAAGTTAGTTCAGCAGCTTA
tgttaac putative branch site (score: 2)
attagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttctttttttcgaatagttattacctcgccgtcatgcctgattagttgttaacaagaccatactactggtcagAGTCTTGCTGTAGGCCCAGCTGAAAAGTCAGGCCTTTCGCGTATTACAACAGTTGCTCCTGGAACAGATGAATCCATTGAGAAGTTAGTTCAGCAGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT