1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcatagagctctggtttttttaccatatgtattttttcctgtccatattctggtatagtatatctggtatttgacatgatgcaagcctcattttctgcagAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGA
species | Oryza sativa |
transcript | LOC_Os02g38080.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAG AACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAEST: gi|3763611|gb|AU030363.1|AU030363
genomic: CCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAGgtataattac ... ttttctgcagAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTA
EST: AAGCTNCTTATGCTGCTGCTTTCAAG AACATTAGNCCTAGTGCAGATAAATTTGCCTGAGGAGCTATCAGAAATCCTEST: gi|29678088|gb|CB674363.1|CB674363
genomic: AAGCTGCTTATGCTGCTGCTTTCAAGgtataattac ... ttttctgcagAACATTAGACCTAGTGCAGAT-AATTTGCCTGAGGAGCTATCAGAAATCCT
EST: CCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAG AACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAEST: gi|29672964|gb|CB669239.1|CB669239
genomic: CCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAGgtataattac ... ttttctgcagAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTA
EST: CCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAG AACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTA
genomic: CCTTTGAGGGCATGTCTAACCTGCAAGCTGCTTATGCTGCTGCTTTCAAGgtataattac ... ttttctgcagAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTA
tattctggtatagtatatctggtatttgacatgatgcaagcctcattttctgcagAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGA
atttgac putative branch site (score: 23)
cctcattttct putative PPT
tatagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatagagctctggtttttttaccatatgtattttttcctgtccatattctggtatagtatatctggtatttgacatgatgcaagcctcattttctgcagAACATTAGACCTAGTGCAGATAATTTGCCTGAGGAGCTATCAGAAATCCTAACAACCTGCTGGAAGGAAGAACCCAATGAGAGACCGAACTTCACGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC