1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgcccctaatgattagctgctacacttctatgacaaagtatgtgcttccttttttactattgatacatttgtttatgcagTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTT
species | Oryza sativa |
transcript | LOC_Os02g38060.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAG TGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCEST: gi|86541932|gb|CI182138.1|CI182138
genomic: ACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGgtttgcccct ... gtttatgcagTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGC
EST: ACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAG TGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCEST: gi|88215537|gb|CI215386.1|CI215386
genomic: ACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGgtttgcccct ... gtttatgcagTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGC
EST: ATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAG TGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCEST: gi|27547869|gb|CA765880.2|CA765880
genomic: ATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGgtttgcccct ... gtttatgcagTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGC
EST: ACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAG TGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGC
genomic: ACAAACTATCCGAGTTATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGgtttgcccct ... gtttatgcagTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGC
ttctatgacaaagtatgtgcttccttttttactattgatacatttgtttatgcagTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTT
tattgat putative branch site (score: 25)
tttgttt putative PPT
ttttttactattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcccctaatgattagctgctacacttctatgacaaagtatgtgcttccttttttactattgatacatttgtttatgcagTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT